FAIRness of Alliance of Genome Resources

project

FAIR evaluation of the repositories in the Alliance of Genome Resources

Tags: DCPPC

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Project Assessments (166)


Assessment Metrics
Target Rubric   The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. Information is provided on the experimental methods used to generate the data. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. Information is provided describing how to cite the dataset. Licensing information is provided on the dataset’s landing page.
WormBase: Parasite BioMart The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yesbut (0.75) yes (1.00) no (0.00)                  
WormBase: Gene Set Enrichment Analysis The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
WormBase Datasets The FAIRshake dataset rubric
                  yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00)
Gene Ontology Consortium: AmiGO 2 The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00)                  
Gene Ontology Consortium: GO Enrichment Analysis The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) yes (1.00)                  
Gene Ontology Consortium Datasets The FAIRshake dataset rubric
                  no (0.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00)
Saccharomyces Genome Database: YeastMine The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) yes (1.00) no (0.00)                  
Saccharomyces Genome Database: BLAST The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Fungal BLAST The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: GO Term Finder The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: GO Slim Mapper The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) nobut (0.25) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Pattern Matching The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) yes (1.00)                  
The Rat Genome Database Datasets The FAIRshake dataset rubric
                  yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00)
FlyBase: Sequence Downloader The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) no (0.00)                  
The Rat Genome Database: Rat JBrowse The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Rat Genome Database: InterViewer-Protein-Protein Interactions The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
Saccharomyces Genome Database: Design Primers The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Restriction Mapper The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) nobut (0.25)                  
The Rat Genome Database: PhenoMiner The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) yes (1.00) no (0.00)                  
The Rat Genome Database: RatMine The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) no (0.00)                  
 The Rat Genome Database: ACP Haplotyper The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Rat Genome Database: Genome Scanner The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
Saccharomyces Genome Database: Genome Browser The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Gene/Sequence Resources The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) no (0.00) nobut (0.25) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: Genome Snapshot The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)