FAIRness of Alliance of Genome Resources
projectFAIR evaluation of the repositories in the Alliance of Genome Resources
Tags: DCPPC
URL(s):
View Associations View AnalyticsProject Assessments (166)
| Assessment | Metrics | Date | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | The tool has a unique name and an informative description. | The tool can be freely downloaded or accessed from a webpage. | The tool utilizes a community-accepted ontology. | Tutorials for the tool are available on the tools homepage. | Source code is shared in a public repository and is documented. | Previous versions of the tool are made available. | Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. | The tool can be accessed programmatically through an API and follows community standards for open APIs. | Licensing information is provided on the tools homepage. | ||
| The Rat Genome Database: Gene Annotator | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Sep 4, 2018 |
| WormBase: Synteny Viewer | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Variant Visualizer | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Genome Viewer | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Overgo Probe Designer | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Disease Portals | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Genetic Models Available | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Molecular Pathways | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Physiological Pathways | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Gene Search | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Search Ontology | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: Strain Search | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | Sep 4, 2018 |
| The Rat Genome Database: QTL Search | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | Sep 4, 2018 |
| FlyBase: Batch Download | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: Sequence Downloader | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yesbut (0.75) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: Upload/Convert IDs | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: Jump to Gene (J2G) | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yesbut (0.75) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: QuickSearch | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: Vocabularies | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yesbut (0.75) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: QueryBuilder | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: CytoSearch | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| FlyBase: Interactions Browser | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
| The Rat Genome Database: Marker Search | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| FlyBase: BLAST | The FAIRshake tool rubric |
|
nobut (0.25) | yes (1.00) | nobut (0.25) | yesbut (0.75) | no (0.00) | nobut (0.25) | yes (1.00) | no (0.00) | no (0.00) | Sep 4, 2018 |
| FlyBase: ImageBrowse | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | Sep 4, 2018 |
