The tool has a unique name and an informative description.

The tool can be freely downloaded or accessed from a webpage.

The tool utilizes a community-accepted ontology.

Tutorials for the tool are available on the tool’s homepage.

Source code is shared in a public repository and is documented.

Previous versions of the tool are made available.

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.

The tool can be accessed programmatically through an API and follows community standards for open APIs.

Licensing information is provided on the tool’s homepage.

ANISEED database

L1000CDS2

An ultra-fast LINCS L1000 Characteristic Direction signature search engine

iLINCS

An integrative web platform for analysis of LINCS data and signatures

Query App

Connections to user-defined signatures

Drug-Pathway Browser

Interactive map of key signal transduction pathways and drug-target data

Drug/Cell-line Browser

DCB provides interactive visualization of cancer cell-line viability data

GEO2Enrichr

A web app and browser extension to extract and analyze signatures from GEO

Enrichr

An intuitive web-based gene list enrichment analysis tool with 90 libraries

LINCS Data Portal

Provides unified interface for searching all LINCS dataset packages and entities

Drug Response Browser

Online tool for browsing breast cancer cell line drug dose-response data

Omics Integrator

Discovers networks linking proteomic, transcriptomic, and epigenomic data

Breast Cancer Browser

Online tool for browsing multiple datasets relevant to breast cancer biology