FAIRness of Alliance of Genome Resources

project

FAIR evaluation of the repositories in the Alliance of Genome Resources

Tags: DCPPC

URL(s):

View Associations View Analytics

Project Assessments (166)


Assessment Metrics
Target Rubric   The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. Information is provided on the experimental methods used to generate the data. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. Information is provided describing how to cite the dataset. Licensing information is provided on the dataset’s landing page.
Saccharomyces Genome Database: Variant Viewer The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Align Strain Sequences The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: Synteny Viewer The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: Fungal Alignment The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: PDB Search The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: SPELL The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: Yeast Phenotype Ontology The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: Yeast Pathways Database The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database: Search for Physical and Genetic Interactions pages at SGD The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)                  
Saccharomyces Genome Database: YeastGFP The FAIRshake tool rubric
yes (1.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) no (0.00) yesbut (0.75) no (0.00) no (0.00)                  
Saccharomyces Genome Database: Textpresso The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) nobut (0.25) no (0.00) no (0.00)                  
Saccharomyces Genome Database: Global Gene Hunter The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yesbut (0.75) no (0.00) nobut (0.25)                  
Saccharomyces Genome Database Datasets The FAIRshake dataset rubric
                  no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) yes (1.00)
The Zebrafish Information Network: Search for Genes/Markers/Clones The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: BLAST The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) nobut (0.25) no (0.00) nobut (0.25)                  
The Zebrafish Information Network: GBrowse The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Search for Gene Expression Data The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Search for Antibodies The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) yesbut (0.75) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Search for Mutants/Knockdowns/Tg The FAIRshake tool rubric
no (0.00) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Constructs The FAIRshake tool rubric
yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Ontology Search The FAIRshake tool rubric
no (0.00) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network: Search for Publications The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
The Zebrafish Information Network Datasets The FAIRshake dataset rubric
                  no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) no (0.00)
The Rat Genome Database: OLGA – Object List Generator & Analyzer The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)                  
WormBase: Protein Aligner The FAIRshake tool rubric
no (0.00) yes (1.00) no (0.00) no (0.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00)