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FAIRness of Alliance of Genome Resources
project
FAIR evaluation of the repositories in the Alliance of Genome Resources
Tags:
DCPPC
URL(s):
https://www.alliancegenome.org/
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Project Assessments (166)
Assessment
Metrics
Target
Rubric
The tool has a unique name and an informative description.
The tool can be freely downloaded or accessed from a webpage.
The tool utilizes a community-accepted ontology.
Tutorials for the tool are available on the tools homepage.
Source code is shared in a public repository and is documented.
Previous versions of the tool are made available.
Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.
The tool can be accessed programmatically through an API and follows community standards for open APIs.
Licensing information is provided on the tools homepage.
A standardized ID or accession number is used to identify the dataset.
The dataset is described with metadata using a formal, broadly applicable vocabulary.
Information is provided on the experimental methods used to generate the data.
The dataset is hosted in an established data repository, if a relevant repository exists.
The dataset can be downloaded for free from the repository.
Version information is provided for the dataset.
Contact information is provided for the creator(s) of the dataset.
Information is provided describing how to cite the dataset.
Licensing information is provided on the datasets landing page.
Saccharomyces Genome Database: Variant Viewer
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
yesbut (0.75)
no (0.00)
yes (1.00)
Saccharomyces Genome Database: Align Strain Sequences
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: Synteny Viewer
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: Fungal Alignment
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: PDB Search
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
yes (1.00)
yesbut (0.75)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: SPELL
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: Yeast Phenotype Ontology
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
yes (1.00)
yesbut (0.75)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
yes (1.00)
Saccharomyces Genome Database: Yeast Pathways Database
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database: Search for Physical and Genetic Interactions pages at SGD
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
yes (1.00)
Saccharomyces Genome Database: YeastGFP
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
no (0.00)
yesbut (0.75)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
no (0.00)
Saccharomyces Genome Database: Textpresso
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
nobut (0.25)
no (0.00)
no (0.00)
Saccharomyces Genome Database: Global Gene Hunter
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
Saccharomyces Genome Database Datasets
The FAIRshake dataset rubric
no (0.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
yesbut (0.75)
no (0.00)
yes (1.00)
The Zebrafish Information Network: Search for Genes/Markers/Clones
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: BLAST
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
nobut (0.25)
no (0.00)
nobut (0.25)
The Zebrafish Information Network: GBrowse
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Search for Gene Expression Data
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Search for Antibodies
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
yesbut (0.75)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Search for Mutants/Knockdowns/Tg
The FAIRshake tool rubric
no (0.00)
yes (1.00)
yes (1.00)
yesbut (0.75)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Constructs
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Ontology Search
The FAIRshake tool rubric
no (0.00)
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network: Search for Publications
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
The Zebrafish Information Network Datasets
The FAIRshake dataset rubric
no (0.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
yes (1.00)
no (0.00)
The Rat Genome Database: OLGA Object List Generator & Analyzer
The FAIRshake tool rubric
yesbut (0.75)
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
WormBase: Protein Aligner
The FAIRshake tool rubric
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
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