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FAIRness of Alliance of Genome Resources
project
FAIR evaluation of the repositories in the Alliance of Genome Resources
Tags:
DCPPC
URL(s):
https://www.alliancegenome.org/
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Project Assessments (166)
Assessment
Metrics
Target
Rubric
Licensing information is provided on the tools homepage.
The tool has a unique name and an informative description.
The tool can be freely downloaded or accessed from a webpage.
The tool utilizes a community-accepted ontology.
Tutorials for the tool are available on the tools homepage.
Source code is shared in a public repository and is documented.
Previous versions of the tool are made available.
Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.
The tool can be accessed programmatically through an API and follows community standards for open APIs.
Licensing information is provided on the tools homepage.
A standardized ID or accession number is used to identify the dataset.
The dataset is described with metadata using a formal, broadly applicable vocabulary.
Information is provided on the experimental methods used to generate the data.
The dataset is hosted in an established data repository, if a relevant repository exists.
The dataset can be downloaded for free from the repository.
Version information is provided for the dataset.
Contact information is provided for the creator(s) of the dataset.
Information is provided describing how to cite the dataset.
Licensing information is provided on the datasets landing page.
The structure of the repository permits efficient discovery of data and metadata by end users.
The repository uses a standardized protocol to permit access by users.
The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts.
Tools that can be used to analyze each dataset are listed on the corresponding dataset pages.
The repository maintains licenses to manage data access and use.
The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository.
The repository provides documentation for each resource to permit its complete and accurate citation.
A description of the methods used to acquire the data is provided.
Version information is provided for each resource, where available.
ANISEED database
The metadata includes a title for the data resource
Taxonomies in use are clearly defined and use community accepted terminology
Domains in use are clearly defined and use community accepted terminology
The Rat Genome Database: Data (Cell Lines)
The FAIRshake dataset rubric
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
no (0.00)
no (0.00)
yes (1.00)
yes (1.00)
yesbut (0.75)
FlyBase
The FAIRshake repository rubric
no (0.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
FlyBase: Vocabularies
The FAIRshake tool rubric
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
WormBase
The FAIRshake tool rubric
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
FlyBase: BLAST
The FAIRshake tool rubric
Pathosystems Resource Integration Center (PATRIC)
The FAIRshake repository rubric
FlyBase
The FAIRshake tool rubric
cyNeo4j
The FAIRshake tool rubric
FlyBase: Batch Download
The FAIRshake tool rubric
WormBase
FAIRSharing Rubric
FlyBase
The FAIRshake tool rubric
Mouse Genome Informatics Datasets
The FAIRshake dataset rubric
MouseMine
The FAIRshake tool rubric
Mouse Genome Informatics: MGI Prototypes Area
The FAIRshake tool rubric
Mouse Genome Database (MGI)
The FAIRshake repository rubric
yes (1.00)
yesbut (0.75)
yes (1.00)
nobut (0.25)
yes (1.00)
yesbut (0.75)
yes (1.00)
yesbut (0.75)
yes (1.00)
Saccharomyces Genome Database
The FAIRshake repository rubric
First
5
6
7
(current)