FAIRness of FAIRsharing Databases

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FAIR evaluation of the FAIRsharing databases

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Project Assessments (38)


Assessment Metrics
Target Rubric   The tool has a unique name and an informative description. Source code is shared in a public repository and is documented. Licensing information is provided on the tool’s homepage. The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. Information is provided on the experimental methods used to generate the data. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. Information is provided describing how to cite the dataset. Licensing information is provided on the dataset’s landing page. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available. The metadata includes a title for the data resource includes a title for the data resource specifies the creators specifies the rights holders includes a description of what the data is about provides clear steps to reproduce the data describes how the data was used includes domain and relevant resources describes the resources relationship describes the file type describes the reuse possibilities documented in a standard schema available in a standard machine readable format no restrictions on access no cost to access the data resource can be accessed with a single computable action no cost to reuse the data resource data can be redistributed no cost to redistribute the data resource Taxonomies in use are clearly defined and use community accepted terminology Domains in use are clearly defined and use community accepted terminology Globally unique identifier Persistent identifier Machine-readable metadata Standardized metadata Resource identifier in metadata Resource discovery through web search Open, Free, Standardized Access protocol Protocol to access restricted content Persistence of resource and metadata Resource uses formal language FAIR vocabulary Linked Digital resource license Metadata license Provenance scheme Certificate of compliance to community standard
Reactome The FAIRshake repository rubric
                                          yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00)                                                                          
Reactome The FAIRshake repository rubric
                                          yes (1.00) yesbut (0.75) yes (1.00) no (0.00) yes (1.00) no (0.00) yes (1.00) no (0.00) yes (1.00)                                                                          
GenBank FAIRSharing Rubric
    no (0.00)                                                       yes (1.00)                                     yes (1.00) yes (1.00)                                
c test FAIRSharing Rubric
yes (1.00) yes (1.00) yes (1.00)                                                                                                                                
c test FAIRSharing Rubric
    yes (1.00)                                                       no (0.00)                                     yes (1.00) yes (1.00)                                
CommonsShare-FairShake Integration Test on Helium ALT-Helium
                                                              yes (1.00) yes (1.00) no (0.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00)                                    
CommonsShare-FairShake Integration - QA ALT-Helium
                                                              yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00)                                    
COPDGENE GWAS Analysis on 1,876 WGS samples ALT-Helium
                                                              yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00)                                    
MIARE: Minimum Information About an RNAi Experiment FAIRSharing Rubric
    no (0.00)                                                       no (0.00)                                     no (0.00) yes (1.00)                                
Pangaea - Data Publisher for Earth and Environmental Science FAIR metrics by fairmetrics.org
                                                                                                                                     
Reactome The FAIRshake repository rubric
                                                                                                                                     
GenBank The FAIRshake repository rubric
                                          yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00)                                                                          
FAIRDOMHub The FAIRshake tool rubric
                                                                                                                                     
FAIRDOMHub FAIRSharing Rubric
    yes (1.00)                                                       yes (1.00)                                     no (0.00) no (0.00)                                
NOAA National Centres for Environmental Information FAIRSharing Rubric
                                                                                                                                     
Bgee DataBase for Gene Expression Evolution FAIRSharing Rubric
    no (0.00)                                                       yes (1.00)                                     yes (1.00) no (0.00)                                
MirGeneDB.org FAIRSharing Rubric
                                                                                                                                     
Reactome FAIRSharing Rubric
                                                                                                                                     
Scientific Data ISA-explorer FAIRSharing Rubric
                                                                                                                                     
cyneo4j FAIRSharing Rubric
                                                                                                                                     
FlyBase FAIRSharing Rubric
                                                                                                                                     
Ascidian Network for In Situ Expression and Embryological Data FAIRSharing Rubric
    yes (1.00)                                                       yes (1.00)                                     yes (1.00) yes (1.00)                                
Antabif IPT - AntOBIS IPT - GBIF Belgium FAIRSharing Rubric
                                                                                                                                     
MGnify FAIRSharing Rubric
    yes (1.00)                                                       yes (1.00)                                     yes (1.00) yes (1.00)                                
The Cancer Imaging Archive The FAIRshake dataset rubric