FAIRness of FAIRsharing Databases

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FAIR evaluation of the FAIRsharing databases

Tags: DCPPC

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Project Assessments (40)


Assessment Metrics
Target Rubric   Licensing information is provided on the tool’s homepage. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. Information is provided on the experimental methods used to generate the data. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. Information is provided describing how to cite the dataset. Licensing information is provided on the dataset’s landing page. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available. Transparency Transparency The metadata includes a title for the data resource Licensing information is provided on the tools home page The tool has a unique name and an informative description The tool can be freely downloaded or accessed from a webpage Machine readable metadata Tutorials for the tool are available on the tool’s homepage Source code is shared in a public repository and is documented Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided The tool can be accessed programmatically through an API and follows community standards for open APIs A standardized ID or accession number is used to identify the dataset Taxonomies in use are clearly defined and use community accepted terminology Domains in use are clearly defined and use community accepted terminology
The Cancer Imaging Archive The FAIRshake repository rubric
                    yes (1.00) yes (1.00) yes (1.00)   yes (1.00) yes (1.00) yes (1.00) yes (1.00) nobut (0.25)                            
The Cancer Genome Atlas FAIRSharing Rubric
                                                                 
The Cancer Genome Atlas The FAIRshake dataset rubric
  yesbut (0.75) yesbut (0.75) yes (1.00) yesbut (0.75) yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00)                                              
The Database of Human DNA Methylation and Cancer The FAIRshake dataset rubric
  nobut (0.25) yesbut (0.75) yesbut (0.75) yes (1.00) yes (1.00) nobut (0.25) yes (1.00) yes (1.00) yes (1.00)                                              
Allele Frequency Net Database FAIRSharing Rubric
no (0.00)                                         yes (1.00)                   yes (1.00) no (0.00)
WheatGenome.info FAIRSharing Rubric
                                                                 
ENCODE Project FAIRSharing Rubric
nobut (0.25)                                         yes (1.00)                   yes (1.00) yesbut (0.75)
seurat Common Fund Tools Assessments
                                            yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00)    
seurat The FAIRshake dataset rubric
                                                                 
The FAIRshake repository rubric
                                                                 
The FAIRshake repository rubric
                                                                 
Extracellular RNA Atlas FAIRSharing Rubric
                                                                 
ClinicalTrials.gov FAIRSharing Rubric
yes (1.00)                                     yes (1.00) yes (1.00) yes (1.00)                   yes (1.00) yes (1.00)
Code Ocean FAIRSharing Rubric
                                                                 
Reactome - a curated knowledgebase of biological pathways FAIRSharing Rubric