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FAIRness of FAIRsharing Databases
project
FAIR evaluation of the FAIRsharing databases
Tags:
DCPPC
URL(s):
https://fairsharing.org/
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Project Assessments (40)
Assessment
Metrics
Target
Rubric
Licensing information is provided on the tools homepage.
A standardized ID or accession number is used to identify the dataset.
The dataset is described with metadata using a formal, broadly applicable vocabulary.
Information is provided on the experimental methods used to generate the data.
The dataset is hosted in an established data repository, if a relevant repository exists.
The dataset can be downloaded for free from the repository.
Version information is provided for the dataset.
Contact information is provided for the creator(s) of the dataset.
Information is provided describing how to cite the dataset.
Licensing information is provided on the datasets landing page.
The structure of the repository permits efficient discovery of data and metadata by end users.
The repository uses a standardized protocol to permit access by users.
The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts.
Tools that can be used to analyze each dataset are listed on the corresponding dataset pages.
The repository maintains licenses to manage data access and use.
The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository.
The repository provides documentation for each resource to permit its complete and accurate citation.
A description of the methods used to acquire the data is provided.
Version information is provided for each resource, where available.
Transparency
Transparency
The metadata includes a title for the data resource
Licensing information is provided on the tools home page
The tool has a unique name and an informative description
The tool can be freely downloaded or accessed from a webpage
Machine readable metadata
Tutorials for the tool are available on the tools homepage
Source code is shared in a public repository and is documented
Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided
The tool can be accessed programmatically through an API and follows community standards for open APIs
A standardized ID or accession number is used to identify the dataset
Taxonomies in use are clearly defined and use community accepted terminology
Domains in use are clearly defined and use community accepted terminology
The Cancer Imaging Archive
The FAIRshake repository rubric
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
nobut (0.25)
The Cancer Genome Atlas
FAIRSharing Rubric
The Cancer Genome Atlas
The FAIRshake dataset rubric
yesbut (0.75)
yesbut (0.75)
yes (1.00)
yesbut (0.75)
yesbut (0.75)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
The Database of Human DNA Methylation and Cancer
The FAIRshake dataset rubric
nobut (0.25)
yesbut (0.75)
yesbut (0.75)
yes (1.00)
yes (1.00)
nobut (0.25)
yes (1.00)
yes (1.00)
yes (1.00)
Allele Frequency Net Database
FAIRSharing Rubric
no (0.00)
yes (1.00)
yes (1.00)
no (0.00)
WheatGenome.info
FAIRSharing Rubric
ENCODE Project
FAIRSharing Rubric
nobut (0.25)
yes (1.00)
yes (1.00)
yesbut (0.75)
seurat
Common Fund Tools Assessments
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
seurat
The FAIRshake dataset rubric
The FAIRshake repository rubric
The FAIRshake repository rubric
Extracellular RNA Atlas
FAIRSharing Rubric
ClinicalTrials.gov
FAIRSharing Rubric
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
Code Ocean
FAIRSharing Rubric
Reactome - a curated knowledgebase of biological pathways
FAIRSharing Rubric
First
1
2
(current)