FAIRness of Alliance of Genome Resources
projectFAIR evaluation of the repositories in the Alliance of Genome Resources
Tags: DCPPC
URL(s):
View Associations View AnalyticsProject Assessments (166)
| Assessment | Metrics | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | The tool has a unique name and an informative description. | The tool can be freely downloaded or accessed from a webpage. | The tool utilizes a community-accepted ontology. | Tutorials for the tool are available on the tools homepage. | Source code is shared in a public repository and is documented. | Previous versions of the tool are made available. | Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. | The tool can be accessed programmatically through an API and follows community standards for open APIs. | Licensing information is provided on the tools homepage. | |
| Mouse Genome Informatics: Mouse Tumor Biology (MTB) Database | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) |
| Mouse Genome Informatics: MGI Prototypes Area | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | no (0.00) | yesbut (0.75) | no (0.00) | yesbut (0.75) |
| WormBase: Basic Search | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Query Language Search | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Browse by Species | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Browse by Resource | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: BLAST/Blat | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: e-PCR Search | The FAIRshake tool rubric |
|
nobut (0.25) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Jbrowse | The FAIRshake tool rubric |
|
nobut (0.25) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Genetic Map | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Gbrowse | The FAIRshake tool rubric |
|
nobut (0.25) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Nucleotide Aligner | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| SPELL | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: SimpleMine | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: WormMine | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yesbut (0.75) |
| WormBase: Tree Display | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Schema Display | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| Textpresso | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) |
| WormBase: Resources: Papers | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Ontology Browser | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| WormBase: Synteny Viewer | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) |
| WormBase: Protein Aligner | The FAIRshake tool rubric |
|
yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) |
| Mouse Genome Informatics: Schema Browser | The FAIRshake tool rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) |
| Mouse Genome Informatics: Mouse Models of Human Cancer Pathology Images | The FAIRshake tool rubric |
|
yesbut (0.75) | no (0.00) | yes (1.00) | nobut (0.25) | nobut (0.25) | nobut (0.25) | yes (1.00) | yesbut (0.75) | yesbut (0.75) |
| Mouse Genome Informatics: Recombinase (cre) Activity | The FAIRshake tool rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) |
