FAIRshake

FAIRness of Alliance of Genome Resources

project

FAIR evaluation of the repositories in the Alliance of Genome Resources

Tags: DCPPC

URL(s):

https://www.alliancegenome.org/

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Project Assessments (166)

Assessment		Metrics
Target	Rubric	The tool has a unique name and an informative description.	The tool can be freely downloaded or accessed from a webpage.	The tool utilizes a community-accepted ontology.	Tutorials for the tool are available on the tools homepage.	Source code is shared in a public repository and is documented.	Previous versions of the tool are made available.	Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.	The tool can be accessed programmatically through an API and follows community standards for open APIs.	Licensing information is provided on the tools homepage.	A standardized ID or accession number is used to identify the dataset.	The dataset is described with metadata using a formal, broadly applicable vocabulary.	Information is provided on the experimental methods used to generate the data.	The dataset is hosted in an established data repository, if a relevant repository exists.	The dataset can be downloaded for free from the repository.	Version information is provided for the dataset.	Contact information is provided for the creator(s) of the dataset.	Information is provided describing how to cite the dataset.	Licensing information is provided on the datasets landing page.	The structure of the repository permits efficient discovery of data and metadata by end users.	The repository uses a standardized protocol to permit access by users.	The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts.	Tools that can be used to analyze each dataset are listed on the corresponding dataset pages.	The repository maintains licenses to manage data access and use.	The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository.	The repository provides documentation for each resource to permit its complete and accurate citation.	A description of the methods used to acquire the data is provided.	Version information is provided for each resource, where available.
Mouse Genome Informatics: MGI Gene Ontology Term Finder	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)
Mouse Genome Informatics: MGI Gene Ontology GO_Slim Chart Tool	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	yesbut (0.75)	yesbut (0.75)	yesbut (0.75)
FlyBase: Coordinate Converter	The FAIRshake tool rubric	yesbut (0.75)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase: RNA-Seq Similarity	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase: RNA-Seq Profile	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase: RNA-Seq By Region	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	nobut (0.25)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase: Fast-Track Your Paper	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase: Find a Person	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
FlyBase Datasets	The FAIRshake dataset rubric										nobut (0.25)	no (0.00)	no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)
FlyBase	The FAIRshake repository rubric																			yesbut (0.75)	yes (1.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)	no (0.00)	yesbut (0.75)	yes (1.00)	yesbut (0.75)
WormBase	The FAIRshake repository rubric																			yesbut (0.75)	yes (1.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)	yesbut (0.75)	yes (1.00)	yes (1.00)	yes (1.00)
Gene Ontology Consortium	The FAIRshake repository rubric																			yes (1.00)	yes (1.00)	yes (1.00)	nobut (0.25)	yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)
Saccharomyces Genome Database	The FAIRshake repository rubric																			yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)	yes (1.00)
ZFIN	The FAIRshake repository rubric																			yesbut (0.75)	yes (1.00)	yes (1.00)	yesbut (0.75)	no (0.00)	yes (1.00)	yesbut (0.75)	yesbut (0.75)	nobut (0.25)
RGD	The FAIRshake repository rubric																			yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)
Mouse Genome Database (MGI)	The FAIRshake repository rubric																			yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	yesbut (0.75)	yes (1.00)	yesbut (0.75)	no (0.00)
FlyBase: BLAST	The FAIRshake tool rubric	yesbut (0.75)	yes (1.00)	yes (1.00)	nobut (0.25)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
Mouse Phenome Database (MPD)	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)
International Mouse Phenotyping Consortium (IMPC)	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	yes (1.00)	no (0.00)
Deciphering the Mechanisms of Developmental Disorders (DMDD)	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	yes (1.00)	yes (1.00)	no (0.00)	yes (1.00)
International Mouse Strain Resource (IMSR)	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	yesbut (0.75)
NCBI BLAST	The FAIRshake tool rubric	yes (1.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)
Mouse Genome Informatics Datasets	The FAIRshake dataset rubric										no (0.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	yes (1.00)	no (0.00)	yes (1.00)	yes (1.00)	yesbut (0.75)
MouseCyc	The FAIRshake tool rubric	no (0.00)	no (0.00)	no (0.00)	no (0.00)	no (0.00)	no (0.00)	no (0.00)	no (0.00)	no (0.00)
The Rat Genome Database: Data (Genes)	The FAIRshake dataset rubric										nobut (0.25)	yes (1.00)	nobut (0.25)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)

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