FAIRness of Alliance of Genome Resources

project

FAIR evaluation of the repositories in the Alliance of Genome Resources

Tags: DCPPC

URL(s):

View Associations View Analytics

Project Assessments (166)


Assessment Metrics Date
Target Rubric   The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. Information is provided on the experimental methods used to generate the data. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. Information is provided describing how to cite the dataset. Licensing information is provided on the dataset’s landing page. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available.
Mouse Genome Informatics: MGI Gene Ontology Term Finder The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yesbut (0.75) yesbut (0.75)                                     Sep 4, 2018
Mouse Genome Informatics: MGI Gene Ontology GO_Slim Chart Tool The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yesbut (0.75) yesbut (0.75) yesbut (0.75)                                     Sep 4, 2018
FlyBase: Coordinate Converter The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase: RNA-Seq Similarity The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase: RNA-Seq Profile The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase: RNA-Seq By Region The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) nobut (0.25) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase: Fast-Track Your Paper The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase: Find a Person The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
FlyBase Datasets The FAIRshake dataset rubric
                  nobut (0.25) no (0.00) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yesbut (0.75)                   Sep 4, 2018
FlyBase The FAIRshake repository rubric
                                    yesbut (0.75) yes (1.00) yes (1.00) yesbut (0.75) yesbut (0.75) no (0.00) yesbut (0.75) yes (1.00) yesbut (0.75) Sep 4, 2018
WormBase The FAIRshake repository rubric
                                    yesbut (0.75) yes (1.00) yes (1.00) yesbut (0.75) yesbut (0.75) yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) Sep 4, 2018
Gene Ontology Consortium The FAIRshake repository rubric
                                    yes (1.00) yes (1.00) yes (1.00) nobut (0.25) yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) yesbut (0.75) Sep 4, 2018
Saccharomyces Genome Database The FAIRshake repository rubric
                                    yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) yesbut (0.75) yes (1.00) Sep 4, 2018
ZFIN The FAIRshake repository rubric
                                    yesbut (0.75) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) yes (1.00) yesbut (0.75) yesbut (0.75) nobut (0.25) Sep 4, 2018
RGD The FAIRshake repository rubric
                                    yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) Sep 4, 2018
Mouse Genome Database (MGI) The FAIRshake repository rubric
                                    yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) yes (1.00) yesbut (0.75) yes (1.00) yesbut (0.75) no (0.00) Sep 4, 2018
FlyBase: BLAST The FAIRshake tool rubric
yesbut (0.75) yes (1.00) yes (1.00) nobut (0.25) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
Mouse Phenome Database (MPD) The FAIRshake tool rubric
yes (1.00) yes (1.00) yesbut (0.75) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) yes (1.00)                                     Sep 4, 2018
International Mouse Phenotyping Consortium (IMPC) The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) no (0.00)                                     Sep 4, 2018
Deciphering the Mechanisms of Developmental Disorders (DMDD) The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) no (0.00) yes (1.00)                                     Sep 4, 2018
International Mouse Strain Resource (IMSR) The FAIRshake tool rubric
yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) no (0.00) no (0.00) yes (1.00) no (0.00) yesbut (0.75)                                     Sep 4, 2018
NCBI BLAST The FAIRshake tool rubric
yes (1.00) yes (1.00) yesbut (0.75) yes (1.00) no (0.00) no (0.00) yes (1.00) yes (1.00) yes (1.00)                                     Sep 4, 2018
Mouse Genome Informatics Datasets The FAIRshake dataset rubric
                  no (0.00) yes (1.00) yesbut (0.75) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) yesbut (0.75)                   Sep 4, 2018
MouseCyc The FAIRshake tool rubric
no (0.00) no (0.00) no (0.00) no (0.00) no (0.00) no (0.00) no (0.00) no (0.00) no (0.00)                                     Sep 4, 2018
The Rat Genome Database: Data (Genes) The FAIRshake dataset rubric
                  nobut (0.25) yes (1.00) nobut (0.25) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) no (0.00)                   Sep 4, 2018