GTEx: Assessment of NIH Common Fund Resources with C2M2
Tags: nihcommonfund
URL(s):
- https://commonfund.nih.gov/gtex
- https://gtexportal.org/home/datasets
- https://github.com/nih-cfde/FAIR/tree/master/GTEx
Project Assessments (48936)
| Assessment | Metrics | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | NIH program name is available for querying | NIH project name is available for querying | Machine-readable metadata | The institution that created this dataset is available | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | A relevant anatomical part is present and resolvable in the UBERON Ontology | Open, Free, Standardized Access protocol | A relevant disease is present and resolvable in the MONDO Ontology | A relevant file type is present and resolvable in the EDAM Ontology | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | A relevant cell line is present and resolvable in the Cellosaurus Ontology | Globally unique identifier | Digital resource license | Resource identifier in metadata | A landing page exists and is accessible | Metadata license | Contact information is provided for the creator(s) of the dataset. | |
| GTEx_Analysis_2016-01-15_v7_STARv2.4.2a_junctions | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RSEMv1.2.22_transcript_expected_count | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_reads | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_covariates | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RSEMv1.2.22_transcript_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7.metasoft | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_expression_matrices | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_all_associations | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_exon_reads | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_median_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| iMN (Exp 2) - ALS, SMA and Control (unaffected) iMN cell lines differentiated from iPS cell lines using a long differentiation protocol - RNA-seq | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) |
| GTEx_Analysis_2016-01-15_v7_STARv2.4.2a_junctions | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RSEMv1.2.22_transcript_expected_count | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_reads | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_covariates | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RSEMv1.2.22_transcript_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7.metasoft | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_expression_matrices | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL_all_associations | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_exon_reads | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_median_tpm | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
| GTEx_Analysis_v7_eQTL | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) |
