4DN data portal
projectThe 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.
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View Associations View AnalyticsProject Assessments (111)
| Assessment | Metrics | Date | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | Globally unique identifier | NIH program name is available for querying | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | NIH project name is available for querying | Open, Free, Standardized Access protocol | The institution that created this dataset is available | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | A relevant anatomical part is present and resolvable in the UBERON Ontology | A relevant disease is present and resolvable in the MONDO Ontology | A relevant file type is present and resolvable in the EDAM Ontology | Digital resource license | Metadata license | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | A relevant cell line is present and resolvable in the Cellosaurus Ontology | A landing page exists and is accessible | Contact information is provided for the creator(s) of the dataset. | ||
| E/L repliseq on U2OS cells (2017-08-17) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| sciATAC-seq on F123 cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| 5C on 6Mb of chrX | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 | |
| DpnII-seq on K562 cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| Bru-seq on F121-9 mESCs | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| H3K4me2 - K562 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| Dual color smFISH on fruit fly embryo (nuclear cycle 13) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| single cell Hi-C on sorted haploid H129-1s | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| Live imaging of chromatin topology and transcription | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| RNA-seq of early embryos in vitro | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| TSA-seq SON in K562 - HS | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| NAD-seq on MEF cells (not crosslinked) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| TCC on IMR90 +/- Adenovirus | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| Hi-C and Micro-C on WTC-11 derived iPS cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| sciHi-C on F121-6 cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| RNA-DNA SPRITE on pSM33 mESCs | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| DNA FISH on Chr4 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| DamID-seq on HCT116 cells (2018-10-22) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| 16-fraction Repli-seq on H1-hESC | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| TRIP on K562 cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| Immunofluorescence on synchronyzed HeLa cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| HiChIP-seq on NIH-3T3 cells | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| pADamID on Hap1 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
| DNA SPRITE on GM12878 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | May 30, 2023 |
