4DN data portal
projectThe 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.
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View Associations View AnalyticsProject Assessments (111)
| Assessment | Metrics | Date | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | A standardized ID or accession number is used to identify the dataset. | The dataset is described with metadata using a formal, broadly applicable vocabulary. | Information is provided on the experimental methods used to generate the data. | The dataset is hosted in an established data repository, if a relevant repository exists. | The dataset can be downloaded for free from the repository. | Version information is provided for the dataset. | Contact information is provided for the creator(s) of the dataset. | Information is provided describing how to cite the dataset. | Licensing information is provided on the datasetÂ’s landing page. | ||
| DNA FISH on Chr4 | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| DamID-seq on HCT116 cells (2018-10-22) | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| 16-fraction Repli-seq on H1-hESC | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| TRIP on K562 cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Immunofluorescence on synchronyzed HeLa cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| HiChIP-seq on NIH-3T3 cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| pADamID on Hap1 | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| DNA SPRITE on GM12878 | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| BLISS on HEK293 cells after multi-target Crispr | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Multi-contact 3C on HeLa cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| ATAC-seq on H1-hESC (Tier 1) | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Chromatin tracing of BX-C in Drosophila | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| iMARGI on H1 cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| ChIA-PET in GM12878 | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| ChIA-PET in H1-hESC | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| sisHi-C of early embryos in vitro | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Synthetic condensation assay of tudor domain | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| H3K4me3 PLAC-seq on embryonic C57BL/6N mouse tissue | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| DNase Hi-C on tissues | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| ChIP-seq on Hela SMC3 and CTCF | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| ChromEMT | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Non-enriched ChIA-Drop on GM19239 | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| sciRNA-seq on F123 cells | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
| GAM on mouse brain cell types | The FAIRshake dataset rubric |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | May 30, 2023 |
