4DN data portal

project

The 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.

Tags: Project

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Associated Digital Objects (59)

4DN Jupyter Hub Tool - BETA

Jupyter notebook for dpwnloading/viewing 4DN Data

4DN tool

4DN Visualization Workspace

tool

Toll allowing users to create 1D or 2D genome display

MicroMeta - Beta tool

tool

Interface to collect metadata about microscopes

tool

single cell RNA-seq on hamster olfactory sensory neurons

data

single cell RNA-seq on hamster olfactory sensory neurons

Experiment

E/L repliseq on U2OS cells (2017-08-17)

data

E/L repliseq on U2OS cells (2017-08-17)

Experiment

sciATAC-seq on F123 cells

data

sciATAC-seq on F123 cells

Experiment

5C on 6Mb of chrX

data

5C on 6Mb of chrX

Experiment

data

sn-Hi-C on animal zygote with Rad21 deletion with DpnII

Experiment

DpnII-seq on K562 cells

data

DpnII-seq on K562 cells

Experiment

Bru-seq on F121-9 mESCs

data

Bru-seq on F121-9 mESCs

Experiment

H3K4me2 - K562

data

H3K4me2 - K562

Experiment

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