topmed-workflows/functional_equivalent_cwl
This workflow processes high-throughput sequencing data for downstream processing Requirements/expectations : - Human whole-genome pair-end sequencing data in unmapped BAM (uBAM) format - One or more read groups, one per uBAM file, all belonging to a single sample (SM) - Input uBAM files must additionally comply with the following requirements: - filenames all have the same suffix (we use ".unmapped.bam") - files must pass validation by ValidateSamFile - reads are provided in query-sorted order - all reads must have an RG tag - Reference genome must be Hg38 with ALT contigs
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View AssociationsDigital Object Assessments (1)
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| Rubric | Project | Globally unique identifier | Persistent identifier | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | Resource discovery through web search | Open, Free, Standardized Access protocol | Persistence of resource and metadata | Resource uses formal language | FAIR vocabulary | Linked | Digital resource license | Metadata license | Provenance scheme | Certificate of compliance to community standard | ||
| FAIR metrics by fairmetrics.org | Dockstore Automated Testing |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | Jan 24, 2019 |
