dockstore-tool-liftover
Move annotations from one assembly to another usage: liftOver oldFile map.chain newFile unMapped oldFile and newFile are in bed format by default, but can be in GFF and maybe eventually others with the appropriate flags below. The map.chain file has the old genome as the target and the new genome as the query. *********************************************************************** WARNING: liftOver was only designed to work between different assemblies of the same organism. It may not do what you want if you are lifting between different organisms. If there has been a rearrangement in one of the species, the size of the region being mapped may change dramatically after mapping. ***********************************************************************
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View AssociationsDigital Object Assessments (1)
| Assessment | Metrics | Date | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rubric | Project | Globally unique identifier | Persistent identifier | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | Resource discovery through web search | Open, Free, Standardized Access protocol | Persistence of resource and metadata | Resource uses formal language | FAIR vocabulary | Linked | Digital resource license | Metadata license | Provenance scheme | Certificate of compliance to community standard | ||
| FAIR metrics by fairmetrics.org | Dockstore Automated Testing |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | Jan 24, 2019 |
