{"id":6246,"projects":[69],"description":"Move annotations from one assembly to another\n\nusage:\n   liftOver oldFile map.chain newFile unMapped\noldFile and newFile are in bed format by default, but can be in GFF and\nmaybe eventually others with the appropriate flags below.\nThe map.chain file has the old genome as the target and the new genome\nas the query.\n\n***********************************************************************\nWARNING: liftOver was only designed to work between different\n         assemblies of the same organism. It may not do what you want\n         if you are lifting between different organisms. If there has\n         been a rearrangement in one of the species, the size of the\n         region being mapped may change dramatically after mapping.\n***********************************************************************","image":"","tags":"","type":"","title":"dockstore-tool-liftover","url":"https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fcancercollaboratory%2Fdockstore-tool-liftover","authors":[1],"rubrics":[25]}