postgres/private_demo
Convert a bedGraph file to bigWig format (see also http://www.ncbi.nlm.nih.gov/pubmed/20639541 ) usage: bedGraphToBigWig in.bedGraph chrom.sizes out.bw where in.bedGraph is a four column file in the format: <chrom> <start> <end> <value> and chrom.sizes is a two-column file/URL: <chromosome name> <size in bases> and out.bw is the output indexed big wig file. If the assembly <db> is hosted by UCSC, chrom.sizes can be a URL like http://hgdownload.cse.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes or you may use the script fetchChromSizes to download the chrom.sizes file. If not hosted by UCSC, a chrom.sizes file can be generated by running twoBitInfo on the assembly .2bit file. The input bedGraph file must be sorted, use the unix sort command: sort -k1,1 -k2,2n unsorted.bedGraph > sorted.bedGraph
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View AssociationsDigital Object Assessments (1)
| Assessment | Metrics | Date | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rubric | Project | Globally unique identifier | Persistent identifier | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | Resource discovery through web search | Open, Free, Standardized Access protocol | Persistence of resource and metadata | Resource uses formal language | FAIR vocabulary | Linked | Digital resource license | Metadata license | Provenance scheme | Certificate of compliance to community standard | ||
| FAIR metrics by fairmetrics.org | Dockstore Automated Testing |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | Jan 24, 2019 |
