LINCS: Assessment of NIH Common Fund Resources with C2M2
Tags: nihcommonfund
URL(s):
- https://commonfund.nih.gov/lincs
- http://www.lincsproject.org/
- http://lincsportal.ccs.miami.edu/datasets/
- https://github.com/nih-cfde/FAIR/tree/master/LINCS
Project Assessments (2243)
| Assessment | Metrics | Date | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | Globally unique identifier | Machine-readable metadata | The institution that created this dataset is available | Resource identifier in metadata | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | Open, Free, Standardized Access protocol | A relevant anatomical part is present and resolvable in the UBERON Ontology | A relevant disease is present and resolvable in the MONDO Ontology | A relevant file type is present and resolvable in the EDAM Ontology | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | A relevant cell line is present and resolvable in the Cellosaurus Ontology | Digital resource license | A landing page exists and is accessible | Relevant Drug or Small Molecule terms are resolvable in PubChem | Relevant Gene IDs are resolvable as NCBI Entrez Genes | ||
| LINCS gene overexpression signatures | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | maybe (0.50) | no (0.00) | yes (1.00) | maybe (0.52) | Jun 23, 2021 | |
| GCP aggregated data - Chemical perturbations | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| LINCS targeted proteomics signatures | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.39) | no (0.00) | yes (1.00) | yes (0.83) | nobut (0.25) | Jun 23, 2021 |
| LINCS L1000 Antibody Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.50) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| Transcriptomics dataset (March 2016) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | no (0.00) | yes (1.00) | maybe (0.50) | Jun 23, 2021 | |
| LINCS L1000 siRNA Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.50) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| iMN (Exp 2) - ALS, SMA and Control (unaffected) iMN cell lines differentiated from iPS cell lines using a long differentiation protocol - RNA-seq | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| EDS-1014 | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| LINCS L1000 Ligand Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.50) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| P100 aggregated data - Chemical perturbations | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| LINCS L1000 Overexpression Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.49) | no (0.00) | yes (1.00) | Jun 23, 2021 | ||
| LINCS L1000 Chemical Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (0.98) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (0.99) | yes (0.87) | no (0.00) | no (0.00) | maybe (0.47) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 shRNA Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (0.89) | no (0.00) | no (0.00) | maybe (0.49) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 CRISPR Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | maybe (0.50) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 Antibody Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | maybe (0.50) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 siRNA Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | maybe (0.50) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 Ligand Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (0.94) | no (0.00) | no (0.00) | maybe (0.50) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
| LINCS L1000 Overexpression Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | nobut (0.25) | yesbut (0.75) | yes (1.00) | yes (0.83) | no (0.00) | no (0.00) | maybe (0.49) | no (0.00) | yes (1.00) | Sep 20, 2021 | ||
