LINCS: Assessment of NIH Common Fund Resources with C2M2
Tags: nihcommonfund
URL(s):
- https://commonfund.nih.gov/lincs
- http://www.lincsproject.org/
- http://lincsportal.ccs.miami.edu/datasets/
- https://github.com/nih-cfde/FAIR/tree/master/LINCS
Project Assessments (2243)
| Assessment | Metrics | Date | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | NIH program name is available for querying | NIH project name is available for querying | Machine-readable metadata | The institution that created this dataset is available | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | A relevant anatomical part is present and resolvable in the UBERON Ontology | Open, Free, Standardized Access protocol | A relevant disease is present and resolvable in the MONDO Ontology | A relevant file type is present and resolvable in the EDAM Ontology | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | A relevant cell line is present and resolvable in the Cellosaurus Ontology | Globally unique identifier | Digital resource license | Resource identifier in metadata | A landing page exists and is accessible | Metadata license | Contact information is provided for the creator(s) of the dataset. | ||
| MEMA HMEC122L Staining Set 1 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA HCC1954 Staining Set 100 (DMSO control) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA HCC1954 Staining Set 100 (Lapatinib treatment) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| Transcriptomics dataset (March 2016) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| cyc D activation dynamics in MCF10A cells treated with the four core compounds | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| NPK76-II-72-1 KiNativ -- single dose experiment | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA MCF10A Staining Set 3 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA YAPC Staining Set 2 | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA MCF10A Staining Set I | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| XMD8-92 KiNativ -- single dose experiment | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| CH5424802 KiNativ -- single dose experiment | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| Basal profile of receptor tyrosine kinase signaling network measured by ELISA | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines- ATAC-seq | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| PLSR model loadings (pMEK and pERK excluded) from analysis of the covariation of molecular signals with cell viability and apoptosis fraction in BRAF(V600E/D) melanoma cell lines | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| P100 data - Chemical perturbations (MCF10A Common Project) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA MCF10A Staining Set 1] | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| HG-6-64-01 KiNativ -- single dose experiment | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines - RNA-seq | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| L1000 gene expression profiling assay - DOS small molecule perturbagens | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| XMD11-50 KiNativ -- single dose experiment | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| diMN (Exp 3) - ALS and Control (unaffected) diMN cell lines differentiated from iPS cell lines using a short and direct differeintiation protocol - RNA-seq | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| GCP data - Chemical perturbations (MCF10A Common Project) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| P100 aggregated data - Chemical perturbations | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| MEMA HMEC240L Staining Set C | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
| Synovial Fibroblast 3.1: Secretion response of seven primary human synovial fibroblast samples from healthy and rheumatoid arthritis donors to a panel of 3 stimuli and 5 small molecule inhibitors (replicate 1 of 2) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | nobut (0.25) | no (0.00) | yes (1.00) | no (0.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | maybe (0.50) | Sep 23, 2019 |
