LINCS: Assessment of NIH Common Fund Resources with C2M2
Tags: nihcommonfund
URL(s):
- https://commonfund.nih.gov/lincs
- http://www.lincsproject.org/
- http://lincsportal.ccs.miami.edu/datasets/
- https://github.com/nih-cfde/FAIR/tree/master/LINCS
Project Assessments (2243)
| Assessment | Metrics | Date | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Target | Rubric | NIH program name is available for querying | NIH project name is available for querying | The institution that created this dataset is available | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | A relevant anatomical part is present and resolvable in the UBERON Ontology | A relevant disease is present and resolvable in the MONDO Ontology | A relevant file type is present and resolvable in the EDAM Ontology | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | A relevant cell line is present and resolvable in the Cellosaurus Ontology | A landing page exists and is accessible | Contact information is provided for the creator(s) of the dataset. | Relevant Drug or Small Molecule terms are resolvable in PubChem | Relevant Gene IDs are resolvable as NCBI Entrez Genes | Globally unique identifier | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | Open, Free, Standardized Access protocol | Digital resource license | Metadata license | ||
| LDS-1424_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1398_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1355_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1356_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1357_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1358_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1354_1.1.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1548_1.0.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1549_1.0.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | maybe (0.50) | yesbut (0.78) | yes (1.00) | no (0.00) | no (0.00) | nobut (0.25) | Sep 26, 2020 | |||||
| LDS-1293_2.0.tar.gz | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
Oct 15, 2020 | ||||||||||||||||||||
| Transcriptomics dataset (March 2016) | NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric |
|
Mar 1, 2021 | ||||||||||||||||||||
| L1000 Dataset -small molecule, CRISPR perturbagens- LINCS Phase 2 (December 2015) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
yes (1.00) | nobut (0.25) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| LINCS chemical perturbagen signatures | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | maybe (0.48) | yes (1.00) | yes (0.88) | nobut (0.25) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | |||||
| Transcriptomics dataset (August 2015) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | |||||||
| PeptideModifiedSequence_A375_f53da3_NoNAs_n288x5203 | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | |||||||
| Perturbational proteomic and transcriptional profiles of drug perturbations from Broad Institute LINCS Proteomic Characterization Center for Signaling and Epigenetics and Broad Institute LINCS Center for Transcriptomics | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
yes (1.00) | nobut (0.25) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| Transcriptomics dataset (June 2015) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | |||||||
| LINCS consensus gene (CGS) knockdown signatures | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | maybe (0.48) | yes (1.00) | maybe (0.52) | no (0.00) | yes (1.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | ||||||
| Broad Institute L1000 Connectivity Map and RNAseq gene expression profiles on tissue samples from the GTEx project | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
yes (1.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| LINCS L1000 Chemical Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | nobut (0.25) | yes (0.99) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.47) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines - RNA-seq | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
yes (1.00) | nobut (0.25) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| LINCS L1000 shRNA Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | nobut (0.25) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.49) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| LINCS L1000 CRISPR Perturbations (2021) | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | nobut (0.25) | yes (1.00) | nobut (0.25) | nobut (0.25) | yes (1.00) | maybe (0.50) | yes (1.00) | no (0.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| L1000 Dataset -small molecule perturbagens- LINCS Phase 1 | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
yes (1.00) | nobut (0.25) | nobut (0.25) | nobut (0.25) | no (0.00) | no (0.00) | nobut (0.25) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | yesbut (0.75) | no (0.00) | Jun 23, 2021 | |||||||
| VMSiteFlankCentric_A375_f53da3_NoNAs_n288x4433 | NIH Common Fund Data Ecosystem: LINCS (CFDE-LINCS) FAIR Rubric |
|
no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | Jun 23, 2021 | |||||||
