FAIR Assessment of EXOMISER

project

Assessment during the BioIT World 2019.

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Project Assessments (8)


Assessment Metrics
Target Rubric   SmartAPI fields described with an 'x-type' and 'x-description' The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. The dataset is hosted in an established data repository, if a relevant repository exists. The dataset can be downloaded for free from the repository. Version information is provided for the dataset. Contact information is provided for the creator(s) of the dataset. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available. The metadata includes a title for the data resource The metadata specifies the creators The metadata includes a description of what the data is about Machine-readable metadata that describes a digital resource is available. What is the nature and use limitations of the access protocol. Globally unique identifier Persistent identifier Machine-readable metadata Standardized metadata Resource identifier in metadata Resource discovery through web search Open, Free, Standardized Access protocol Protocol to access restricted content Persistence of resource and metadata Resource uses formal language FAIR vocabulary Linked Digital resource license Metadata license Provenance scheme Certificate of compliance to community standard Terms of Service Tags All parameters have descriptions All paths have descriptions All responses have descriptions All paths have a unique operation ID
Exomiser Standalone The FAIRshake tool rubric
  yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) no (0.0) yes (1.0)                                                                                
Exomiser in Lifebit The FAIRshake tool rubric
  yes (1.0) yes (1.0) yesbut (0.75) yes (1.0) no (0.0) yes (1.0) nobut (0.25) yes (1.0) yesbut (0.75)                                                                                
Exomiser in Lifebit The FAIRshake repository rubric
                            yes (1.0) yes (1.0) no (0.0) yes (1.0) yes (1.0) (None) nobut (0.25) yes (1.0) yes (1.0)                                                      
Exomiser in Lifebit The SmartAPI Rubric
(None)                   yes (1.0) yesbut (0.75) yes (1.0) yesbut (0.75)                   yes (1.0) yes (1.0) yes (1.0) no (0.0) yes (1.0)                           no (0.0)     yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0)
Exomiser in Databiology The FAIRshake tool rubric
  yes (1.0) yes (1.0) yesbut (0.75) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0)                                                                                
Pfiffer FAIR metrics by fairmetrics.org
                                                        yes (1.0) no (0.0) no (0.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) (None) no (0.0) yes (1.0) yes (1.0) (None) yes (1.0) yes (1.0) no (0.0) yes (1.0)            
Exomiser in Databiology FAIR metrics by fairmetrics.org
                                                        yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) no (0.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) no (0.0)            
Exomiser in Lifebit FAIR metrics by fairmetrics.org
                                                        yes (1.0) yes (1.0) yes (1.0) no (0.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) yes (1.0) (None) (None) yes (1.0) yes (1.0) no (0.0) (None)