exRNA: CFDE Fairness Assessment

project

ERCC-exRNA FAIRness assessment with the exRNA Atlas, ClinGen Allele Registry, and Linked Data Hub

Tags: exRNA

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Project Assessments (8)


Assessment Metrics
Target Rubric   Version information is provided for the dataset. NIH program name is available for querying NIH project name is available for querying The institution that created this dataset is available A biological assay is present and resolvable in CFDE-specified ontology (OBI) A relevant anatomical part is present and resolvable in the UBERON Ontology A relevant disease is present and resolvable in the MONDO Ontology A relevant file type is present and resolvable in the EDAM Ontology A relevant taxonomy is present and resolvable in the NCBITaxon Ontology A relevant cell line is present and resolvable in the Cellosaurus Ontology A landing page exists and is accessible The tool has a unique name and an informative description. The tool can be freely downloaded or accessed from a webpage. The tool utilizes a community-accepted ontology. Tutorials for the tool are available on the tool’s homepage. Source code is shared in a public repository and is documented. Previous versions of the tool are made available. Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided. The tool can be accessed programmatically through an API and follows community standards for open APIs. Licensing information is provided on the tool’s homepage. Contact information is provided for the creator(s) of the dataset. A standardized ID or accession number is used to identify the dataset. The dataset is described with metadata using a formal, broadly applicable vocabulary. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available. ANISEED database The service has a landing page and accessible The service has a global unique identifier The service has an unique name and an informative description The service can be freely downloaded or accessed from a webpage The service utilizes a community-accepted nomenclature Tutorials for the service are available on the homepage Licensing information is provided on the homepage Versions of the service are displayed on the homepage Contact information is provided for the creator(s) of the service and information describing how to cite the service is provided The service can be accessed programmatically Machine readable data A standardized ID or accession number is used to identify the dataset Information is provided describing how to cite the dataset. Information is provided on the experimental methods used to generate the data. Licensing information is provided on the tools home page The tool has a unique name and an informative description The dataset can be downloaded for free from the repository. The tool can be freely downloaded or accessed from a webpage Machine readable metadata Tutorials for the tool are available on the tool’s homepage Source code is shared in a public repository and is documented Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided The tool can be accessed programmatically through an API and follows community standards for open APIs Licensing information is provided on the dataset’s landing page. A standardized ID or accession number is used to identify the dataset The dataset is hosted in an established data repository, if a relevant repository exists. Globally unique identifier Machine-readable metadata Standardized metadata Resource identifier in metadata Open, Free, Standardized Access protocol Digital resource license Metadata license Do the Data repository use any Identifiers? Do the repository have metadata records/files describing the data? In which format data is described with metadata? Does data repository is registered in any Registry? Does the structure of the Repository allow discovery of data and metadata by end user? Does Data repository uses any protocol to allow access by user? Does the data repository provide public API? Do the data repository provide versioning information of datasets? Does Data repository uses Title for the data resource in Data?
exRNA Atlas The FAIRshake repository rubric
                                              yes (1.00) yes (1.00) yes (1.00) yes (1.00) nobut (0.25) yes (1.00) yes (1.00) yes (1.00) yes (1.00)                                                                                      
exRNA Atlas NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric
  yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) yes (1.00) yesbut (0.75) no (0.00) yes (1.00)                   yes (1.00)                                                                             yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00) no (0.00) no (0.00)                  
exRNA Atlas Findable and Accessible FAIR Principles for Research Data Repositories
                                                                                                                                    yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00) yes (1.00)
Linked Data Hub The FAIRshake tool rubric
                      yes (1.00) yes (1.00) yes (1.00) nobut (0.25) no (0.00) yes (1.00) yesbut (0.75) yes (1.00) no (0.00)                         no (0.00)                                                                                    
Linked Data Hub The FAIRshake dataset rubric
yes (1.00)                                       yes (1.00) yes (1.00) no (0.00)                                             yes (1.00) no (0.00)     yes (1.00)             no (0.00)   nobut (0.25)                                
exRNA Atlas The FAIRshake dataset rubric
yes (1.00)                                       yes (1.00) yes (1.00) yes (1.00)                                             yes (1.00) yes (1.00)     yes (1.00)             nobut (0.25)   yesbut (0.75)                                
Linked Data Hub Common Fund Tools Assessments
                                                                                              no (0.00) yes (1.00)   yes (1.00) yes (1.00) yes (1.00) no (0.00) yes (1.00) yes (1.00)   yes (1.00)                                  
ClinGen Allele Registry ClinGen Allele Registry Rubric Metric
                                                                  yes (1.00) maybe (0.50) yes (1.00) yes (1.00) yes (1.00) yes (1.00) nobut (0.25) nobut (0.25) yes (1.00) yes (1.00) yes (1.00) yes (1.00)