4D Nucleome

data

The goal of the Common Fund’s 4D Nucleome (4DN) program is to study the three-dimensional organization of the nucleus in space and time (the 4th dimension). The nucleus of a cell contains DNA, the genetic “blueprint” that encodes all of the genes a living organism uses to produce proteins needed to carry out life-sustaining cellular functions. Scientists know that how the information in the nucleus organized, stored, and unpackaged are all important to basic human health and we are only starting to learn how changes in this organization can lead to the development of different diseases, such as cancer or our response to infectious agents like viruses.

Tags: nihcommonfund

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Digital Object Assessments (2)


Assessment Metrics Date
Rubric Project   NIH program name is available for querying NIH project name is available for querying The institution that created this dataset is available A biological assay is present and resolvable in CFDE-specified ontology (OBI) A relevant anatomical part is present and resolvable in the UBERON Ontology A relevant file type is present and resolvable in the EDAM Ontology A landing page exists and is accessible Contact information is provided for the creator(s) of the dataset. The structure of the repository permits efficient discovery of data and metadata by end users. The repository uses a standardized protocol to permit access by users. The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts. Tools that can be used to analyze each dataset are listed on the corresponding dataset pages. The repository maintains licenses to manage data access and use. The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository. The repository provides documentation for each resource to permit its complete and accurate citation. A description of the methods used to acquire the data is provided. Version information is provided for each resource, where available. Globally unique identifier Machine-readable metadata Resource identifier in metadata Open, Free, Standardized Access protocol Digital resource license
NIH Common Fund Data Ecosystem (CFDE) FAIR Rubric NIH Common Fund Data Ecosystem (CFDE) FAIR Assessments
yes (1.00) yes (1.00) no (0.00) yesbut (0.69) nobut (0.33) nobut (0.38) maybe (0.49) no (0.00)                   maybe (0.49) maybe (0.57) yes (1.00) no (0.00) no (0.00) Jan 20, 2022
The FAIRshake repository rubric 4DN data portal
                yes (1.00) yes (1.00) yes (1.00) yes (1.00) yesbut (0.75) yes (1.00) yes (1.00) yes (1.00) no (0.00)           Oct 20, 2022