FAIR Data Informatics Laboratory - SPARC CFDE
projectThis project contains Digital Objects from SPARC. FAIRness evaluation is a mixture of the metadata (SPARC C2M2) and the data landing pages (SPARC portal)
Tags: FAIR Data SPARC CFDE
URL(s):
- https://fdilab.org
- https://sparc.science/help/knowledge-management-and-curation-core-k-core-in...
- https://sparc.science
Project Assessments (124)
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| Target | Rubric | Dataset is identified by a persistent identifier | A standardized ID or accession number is used to identify the dataset. | Metadata is accessed through standardised protocol | A landing page exists and is accessible | Repository PID resolves to repository landing page | Landing page metadata is machine readable | Metadata includes the identifier for the dataset. | Metadata includes a resolvable identifier for the dataset. | Metadata is offered in such a way that it can be harvested and indexed. | What is the degree to which the digital resource can be found using web-based search engines | Data is accessible through standardised protocol | A biological assay is present and resolvable in CFDE-specified ontology (OBI) | A relevant anatomical part is present and resolvable in the UBERON Ontology | A relevant file type is present and resolvable in the EDAM Ontology | A relevant taxonomy is present and resolvable in the NCBITaxon Ontology | ORCID Support | The institution that created this dataset is available | NIH program name is available for querying | NIH project or award is available for querying | Metadata includes information about the licence under which the data can be reused | Metadata includes information about the licence under which the metadata can be reused | Licensing information is provided on the datasets landing page | Information is provided on the experimental methods used to generate the data | Contact information is provided for the creator(s) of the dataset | Version information is provided for the dataset | Landing page provides full data citation information | Landing page metadata complies with Schema.org | Dataset is identified by a globally unique identifier | The dataset is hosted in an established data repository, if a relevant repository exists. | Repository provides a search facility | Open, Free, Standardized Access protocol | The metadata can be downloaded for free from the repository. | The dataset can be downloaded for free from the repository. | Dataset is accessible through an access protocol that supports authentication and authorisation | Metadata is guaranteed to remain available after data is no longer available | Landing page is guaranteed to exist after data is no longer available | Metadata can be accessed manually (i.e. with human intervention) | Data can be accessed/downloaded manually (i.e. with human intervention) | Metadata uses FAIR-compliant vocabularies | Repository provides helpdesk support | Metadata refers to a machine-understandable reuse licence | The metadata provides documentation for a dataset to permit its complete and accurate citation. | The repository hosts data and metadata according to a set of defined criteria and community standards | Core Trust Seal Certification or equivalent | Governance Transparency | Repository infrastructure is covered under an Open Source license | Data / Metadata License is open / commons compliant | Free to use data with no or minimal restrictions | Metadata uses knowledge representation expressed in standardised format | Rich metadata describes dataset and allows for discovery | Metadata includes qualified references to other metadata | Metadata includes qualified references to other data | ||
| RNA sequencing reveals novel transcripts from sympathetic stellate ganglia during cardiac sympathetic hyperactivity in rats | SPARC Rubric |
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| Spatial distribution and morphometric characterization of vagal efferents associated with the myenteric plexus of the rat stomach | SPARC Rubric |
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| Functional mapping with lumbosacral epidural stimulation for restoration of bladder function after spinal cord injury in rats | SPARC Rubric |
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| Acute wired ColoMOCA implantation in pig bowel | SPARC Rubric |
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| Pig Vagus Nerve Stained with Masson's Trichrome | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Generic human brainstem scaffold | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | yes (1.00) | maybe (0.50) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | Oct 7, 2021 |
| Prototype Simulation of Undiseased Human Cardiac Ventricular Cells | SPARC Rubric |
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| Chemogenetic Activation or Inhibition of Cholinergic or Nitrergic Myenteric Neurons of Mouse Colon | SPARC Rubric |
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| Rat whole-body scaffold | SPARC Rubric |
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| Comparison of the Intrinsic Cardiac Nervous System Across Male and Female Rat Hearts | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| TRAP-SEQ (Translating Ribosome Affinity Purification followed by RNA sequencing) of iBAT-related ganglia from 7-day cold and warm treated mice | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Electrophysiology in dog after subcutaneous nerve stimulation | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | Oct 7, 2021 |
| Chronic wireless Urological Monitor of Conscious Activity (UroMOCA) implantation in feline bladder | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Spatial distribution and morphometric characterization of vagal afferents associated with the myenteric plexus of the rat stomach | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Functional mapping of the stomach neural circuitry - GES-evoked duodenal motility in rats is stimulation site dependent | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Excitation Properties of Computational Models of Unmyelinated Peripheral Axons | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | no (0.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | Oct 7, 2021 |
| Antibodies tested in the colon – Mouse | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| 3D imaging of enteric neurons in a male mouse | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Effects of nodose ganglion blockade on gastric motility during cervical vagus nerve stimulation measured with magnetic resonance imaging in rats | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Influence of acute thoracolumbar root nerves electrical stimulation on colonic motility in anesthetized male Yucatan minipigs | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Endorgan-specific Pseudorabies (PRV) infection in mouse kidney and liver | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Pig vagus nerve TH (tyrosine hydroxylase) and ChAT (choline acetyltransferase) positive fibers | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Bilateral recordings of cervical vagus nerve activity | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Human Vagus Nerve Stained with Masson's Trichrome | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
| Visualizing sympathetic projections in the intact brown adipose tissue depot in the mouse | SPARC Rubric |
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yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yesbut (0.75) | yesbut (0.75) | maybe (0.50) | maybe (0.50) | yes (1.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yesbut (0.75) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | no (0.00) | maybe (0.50) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | Oct 7, 2021 |
