Digital Objects (545126)

GenomeScope

Fast reference-free genome profiling from short reads

RAMPART

A workflow management system for de novo genome assembly

MOCAT2

A metagenomic assembly, annotation and profiling framework

Manta

Rapid detection of structural variants and indels for germline and cancer sequencing applications

shinyGEO

A web-based application for analyzing gene expression omnibus datasets

Genomic dark matter

The reliability of short read mapping illustrated by the genome mappability score

RNA-Skim

A rapid method for RNA-Seq quantification at transcript level

RNAseqViewer

Visualization tool for RNA-Seq data

Phylesystem

A git-based data store for community-curated phylogenetic estimates

FireDB

fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues...

FLOR-ID

An interactive database of flowering-time gene networks in Arabidopsis thaliana