Licensing information is provided on the tools home page

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

The tool has a unique name and an informative description

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

The tool can be freely downloaded or accessed from a webpage

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Machine readable metadata

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Tutorials for the tool are available on the tool’s homepage

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Source code is shared in a public repository and is documented

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

The tool can be accessed programmatically through an API and follows community standards for open APIs

The availability of machine-readable metadata that describes a digital resource.

A standardized ID or accession number is used to identify the dataset

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

CAFE

an R package for the detection of gross chromosomal abnormalities from gene expression microarray da...

CAFE MOCHA

An Integrated Platform for Discovering Clinically Relevant Molecular Changes in CancerAn Example of ...

Cafe Variome

generalpurpose software for making genotypephenotype data discoverable in restricted or open access ...

CafeMol

A CoarseGrained Biomolecular Simulator for Simulating Proteins at Work.

CAFU

a Galaxy framework for exploring unmapped RNASeq data.

CAGEdoPOSSUM

motif enrichment analysis from CAGEderived TSSs.

CAGEr

precise TSS data retrieval and highresolution promoterome mining for integrative analyses.

CAGExploreR

an R package for the analysis and visualization of promoter dynamics across multiple experiments.

CAGm

a repository of germline microsatellite variations in the 1000 genomes project.

CAGO

a software tool for dynamic visual comparison and correlation measurement of genome organization.

Caipirini

using gene sets to rank literature.