ToolStory Assessments

rubric

Evaluation of tools and datasets.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

btools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

btools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

btools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

btools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

btools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

btools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

btools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

btools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

btools

Associated Digital Objects (20465)

3DMolNavi

tool

a webbased retrieval and navigation tool for flexible molecular shape comparison.

3DNALandscapes

tool

a database for exploring the conformational features of DNA.

3DPatch

tool

fast 3D structure visualization with residue conservation.

3DProIN

tool

ProteinProtein Interaction Networks and Structure Visualization.

3Drefine

tool

an interactive web server for efficient protein structure refinement.

3dRPC

tool

Using for RNAprotein complex structure prediction

3dsurfer

tool

web platform for realtime search and characterization of protein surfaces.

3dswappred

tool

prediction of 3D domain swapping from protein sequence using Random Forest approach.

3DTF

tool

a web server for predicting transcription factor PWMs using 3D structurebased energy calculations.

3DVirtualGarden

tool

Virtual garden computer program for use in exploring the elements of biodiversity people want in cit...

3FunMap

tool

fullsib family functional mapping of dynamic traits.