Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

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Associated Digital Objects (262)

fastBMA

tool

Scalable Network Inference And Transitive Reduction

Library of Integrated Network-Based Cellular Signatures (LINCS)

PyNAST

tool

A Flexible Tool For Aligning Sequences To A Template Alignment

Human Microbiome Project

CyNetworkBMA

tool

A Cytoscape App For Inferring Gene Regulatory Networks

Library of Integrated Network-Based Cellular Signatures (LINCS)

IMG/M-HMP

tool

A Metagenome Comparative Analysis System For The Human Microbiome Project

Human Microbiome Project

Bowtie

tool

Ultrafast And Memoryefficient Alignment Of Short Dna Sequences To The Human Genome

Human Microbiome Project

TopiaryExplorer

tool

Visualizing Large Phylogenetic Trees With Environmental Metadata

Human Microbiome Project

bioBakery

tool

A Meta'Omic Analysis Environment

Human Microbiome Project

DGIdb 2.0

tool

Mining Clinically Relevant Drug-Gene Interactions

Gabriella Miller Kids First

UCSC Genome Browser

tool

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