Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

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Associated Digital Objects (262)

PLATYPUS

tool

A Multiple-View Learning Predictive Framework For Cancer Drug Sensitivity Prediction

Library of Integrated Network-Based Cellular Signatures (LINCS)

The Inflammatory Bowel Disease Multiomics Database

tool

Multiomics Of The Gut Microbial Ecosystem In Inflammatory Bowel Diseases

Human Microbiome Project

OSCI

tool

Standardized Stem Cell Ontology Representation And Use Cases For Stem Cell Investigation

Library of Integrated Network-Based Cellular Signatures (LINCS)

MIA-Sig

tool

Multiplex Chromatin Interaction Analysis By Signal Processing And Statistical Algorithms

4D Nucleome

SDA

tool

A Semi-Parametric Differential Abundance Analysis Method For Metabolomics And Proteomics Data

Metabolomics

FastHiC

tool

A Fast And Accurate Algorithm To Detect Long-Range Chromosomal Interactions From Hi-C Data

4D Nucleome

SDA

tool

Longread Sequence And Assembly Of Segmental Duplications

Big Data to Knowledge

FastSKAT

tool

Sequence Kernel Association Tests For Very Large Sets Of Markers

Gabriella Miller Kids First

ChEA3

tool

Transcription Factor Enrichment Analysis By Orthogonal Omics Integration

Library of Integrated Network-Based Cellular Signatures (LINCS)

WikiGenomes

tool

An Open Web Application For Community Consumption And Curation Of Gene Annotation Data In Wikidata

Big Data to Knowledge

HT-eQTL

tool

Integrative Expression Quantitative Trait Loci Analysis In A Large Number Of Human Tissues

Genotype-Tissue Expression (GTEx)

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