Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (522)

ORegAnno 3.0

tool

A Community-Driven Resource For Curated Regulatory Annotation

Genotype-Tissue Expression (GTEx)

LC-IMS-MS

tool

Detecting Multidimensional Liquid Chromatography, Ion Mobility And Mass Spectrometry Features In Com...

Metabolomics

LipidBlast

tool

Templates As Flexible Tools For Creating New In-Silico Tandem Mass Spectral Libraries

Metabolomics

PhenoDB

tool

A New Web-Based Tool For The Collection, Storage, And Analysis Of Phenotypic Features

Gabriella Miller Kids First

Monocle 2

tool

Reversed Graph Embedding Resolves Complex Single-Cell Trajectories

4D Nucleome

TraP

tool

Annotating Pathogenic Non-Coding Variants In Genic Regions

Undiagnosed Diseases

BTH

tool

Statistical Tests For Detecting Variance Effects In Quantitative Trait Studies

Genotype-Tissue Expression (GTEx)

SomaticSniper

tool

Identification Of Somatic Point Mutations In Whole Genome Sequencing Data

Gabriella Miller Kids First

CRISPhieRm

tool

A Hierarchical Mixture Model For Crispr Pooled Screens

4D Nucleome

MetaXcan

tool

Exploring The Phenotypic Consequences Of Tissue Specific Gene Expression Variation Inferred From Gwa...

Genotype-Tissue Expression (GTEx)

ARDISS

tool

Accurate And Adaptive Imputation Of Summary Statistics In Mixedethnicity Cohorts

Metabolomics