Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (522)

MuSiC

tool

Identifying Mutational Significance In Cancer Genomes

Gabriella Miller Kids First

GenomicGPS

tool

Using Genetic Distance From Individuals To Public Data For Genomic Analysis Without Disclosing Perso...

Big Data to Knowledge

HaploReg v4

tool

Systematic Mining Of Putative Causal Variants, Cell Types, Regulators And Target Genes For Human Com...

Genotype-Tissue Expression (GTEx)

BARCRAWL and BARTAB

tool

Software Tools For The Design And Implementation Of Barcoded Primers For Highly Multiplexed Dna Sequ...

Human Microbiome Project

eXpression2Kinases (X2K) Web

tool

Linking Expression Signatures To Upstream Cell Signaling Networks

Library of Integrated Network-Based Cellular Signatures (LINCS)

ConceptMetab

tool

Exploring Relationships Among Metabolite Sets To Identify Links Among Biomedical Concepts

Metabolomics

gPCA

tool

Quantifying Heterogeneity Of Expression Data Based On Principal Components

Metabolomics

svtools

tool

Population-Scale Analysis Of Structural Variation

Gabriella Miller Kids First

Annot

tool

A Django-Based Sample, Reagent, And Experiment Metadata Tracking System

Library of Integrated Network-Based Cellular Signatures (LINCS)

gencrypt

tool

One-Way Cryptographic Hashes To Detect Overlapping Individuals Across Samples

Metabolomics

GAA

tool

Graph Accordance Of Nextgeneration Sequence Assemblies

Human Microbiome Project