Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (522)

MGAviewer

tool

A Desktop Visualization Tool For Analysis Of Metagenomics Alignment Data

Human Microbiome Project

MINEs

tool

Open Access Databases Of Computationally Predicted Enzyme Promiscuity Products For Untargeted Metabo...

Metabolomics

Specter

tool

Linear Deconvolution For Targeted Analysis Of Data-Independent Acquisition Mass Spectrometry Proteom...

Library of Integrated Network-Based Cellular Signatures (LINCS)

DTO

tool

Drug Target Ontology To Classify And Integrate Drug Discovery Data

Library of Integrated Network-Based Cellular Signatures (LINCS)

CD-HIT

tool

Accelerated For Clustering The Next-Generation Sequencing Data

Human Microbiome Project

MetAMOS

tool

A Modular And Open Source Metagenomic Assembly And Analysis Pipeline

Human Microbiome Project

snptools

tool

An Integrative Variant Analysis Pipeline For Accurate Genotype/Haplotype Inference In Population Ngs...

Gabriella Miller Kids First

UCSC

tool

Multidimensional Data Views In Pathway Context

Library of Integrated Network-Based Cellular Signatures (LINCS)

MBV

tool

A Method To Solve Sample Mislabeling And Detect Technical Bias In Large Combined Genotype And Sequen...

Genotype-Tissue Expression (GTEx)

XCMS Online

tool

A Web-Based Platform To Process Untargeted Metabolomic Data

Metabolomics

EFO-CLO-Alignment

tool

Comparison, Alignment, And Synchronization Of Cell Line Information Between Clo And Efo

Library of Integrated Network-Based Cellular Signatures (LINCS)