Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

View Assessments

Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Create New Metric

Associated Digital Objects (522)

Simrank

tool

Rapid And Sensitive General-Purpose K-Mer Search Tool

Human Microbiome Project

Credentialing features

tool

A Platform To Benchmark And Optimize Untargeted Metabolomic Methods

Metabolomics

eGenes

tool

Applying Metaanalysis To Genotypetissue Expression Data From Multiple Tissues To Identify Eqtls And ...

Genotype-Tissue Expression (GTEx)

MS2Analyzer

tool

A Software For Small Molecule Substructure Annotations From Accurate Tandem Mass Spectra

Metabolomics

Atlas2 Cloud

tool

A Framework For Personal Genome Analysis In The Cloud

Epigenomics

MAPS

tool

Model-Based Analysis Of Long-Range Chromatin Interactions From Plac-Seq And Hichip Experiments

4D Nucleome

optitdba

tool

Conservation Of Gene Cassettes Among Diverse Viruses Of The Human Gut

Human Microbiome Project

TopDom

tool

An Efficient And Deterministic Method For Identifying Topological Domains In Genomes

4D Nucleome

fastBMA

tool

Scalable Network Inference And Transitive Reduction

Library of Integrated Network-Based Cellular Signatures (LINCS)

PyNAST

tool

A Flexible Tool For Aligning Sequences To A Template Alignment

Human Microbiome Project

CyNetworkBMA

tool

A Cytoscape App For Inferring Gene Regulatory Networks

Library of Integrated Network-Based Cellular Signatures (LINCS)

Create New Digital Object