Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

View Assessments

Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Create New Metric

Associated Digital Objects (522)

The 3D Genome Browser

tool

A Web-Based Browser For Visualizing 3D Genome Organization And Long-Range Chromatin Interactions

4D Nucleome

sQTLseekeR

tool

Identification Of Genetic Variants Associated With Alternative Splicing Using Sqtlseeker

Genotype-Tissue Expression (GTEx)

ExoCarta

tool

A Web-Based Compendium Of Exosomal Cargo

Extracellular RNA Communication

sciclo

tool

Inferring Clonal Architecture And Tracking The Spatial And Temporal Patterns Of Tumor Evolution

Gabriella Miller Kids First

Bambus 2

tool

Scaffolding Metagenomes

Human Microbiome Project

IRBIS

tool

A Systematic Search For Conserved Complementarity

Genotype-Tissue Expression (GTEx)

UCHIME

tool

Improves Sensitivity And Speed Of Chimera Detection

Human Microbiome Project

wge

tool

A Crispr Database For Genome Engineering

Knockout Mouse Phenotyping

PLATYPUS

tool

A Multiple-View Learning Predictive Framework For Cancer Drug Sensitivity Prediction

Library of Integrated Network-Based Cellular Signatures (LINCS)

The Inflammatory Bowel Disease Multiomics Database

tool

Multiomics Of The Gut Microbial Ecosystem In Inflammatory Bowel Diseases

Human Microbiome Project

OSCI

tool

Standardized Stem Cell Ontology Representation And Use Cases For Stem Cell Investigation

Library of Integrated Network-Based Cellular Signatures (LINCS)

Create New Digital Object