Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (522)

SNIPER

tool

Subcompartment Inference Using Imputed Probabilistic Expressions

4D Nucleome

CGAR

tool

An Interactive Web Application For Prioritizing Clinically Implicated Variants From Genome Sequencin...

Undiagnosed Diseases

qSR

tool

A Quantitative Super-Resolution Analysis Tool Reveals The Cell-Cycle Dependent Organization Of Rna P...

4D Nucleome

GREIN

tool

An Interactive Web Platform For Re-Analyzing Geo Rna-Seq Data

Library of Integrated Network-Based Cellular Signatures (LINCS)

RiVIERA-beta

tool

Joint Bayesian Inference Of Risk Variants And Tissue-Specific Epigenomic Enrichments Across Multiple...

Genotype-Tissue Expression (GTEx)

Multilayer Extraction

tool

Community Extraction In Multilayer Networks With Heterogeneous Community Structure

Genotype-Tissue Expression (GTEx)

GNPS

tool

Sharing And Community Curation Of Mass Spectrometry Data With Global Natural Products Social Molecul...

Metabolomics

ISiCLE

tool

A Quantum Chemistry Pipeline For Establishing In Silico Collision Cross Section Libraries

Metabolomics

PrediXca

tool

Survey Of The Heritability And Sparse Architecture Of Gene Expression Traits Across Human Tissues

Genotype-Tissue Expression (GTEx)

EWAS

tool

Sparse Pca Corrects For Cell Type Heterogeneity In Epigenomewide Association Studies

Big Data to Knowledge

Drug/Cell-line Browser

tool

Interactive Canvas Visualization Of Cancer Drug/Cell-Line Viability Assay Datasets

Library of Integrated Network-Based Cellular Signatures (LINCS)