Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

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Associated Digital Objects (522)

The GCTx format and cmap{Py, R, M, J} packages

tool

Resources For Optimized Storage And Integrated Traversal Of Annotated Dense Matrices

Big Data to Knowledge

LipidMatch

tool

An Automated Workflow For Rule-Based Lipid Identification Using Untargeted High-Resolution Tandem Ma...

Metabolomics

LC/MS

tool

Increased Precision Of Metabolomic Data Processing By Consensus Integration Bound Analysis

Metabolomics

The Hematopoietic Expression Viewer

tool

Expanding Mobile Apps As A Scientific Tool

Metabolomics

SEP-L1000

tool

Druginduced Adverse Events Prediction With The Lincs L1000 Data

Library of Integrated Network-Based Cellular Signatures (LINCS)

MultiTrans

tool

Multiple Testing In Transformed Space

Big Data to Knowledge

RAPSearch2

tool

A Fast And Memory-Efficient Protein Similarity Search Tool For Next-Generation Sequencing Data

Human Microbiome Project

mcaGUI

tool

Microbial Community Analysis R-Graphical User Interface (Gui)

Human Microbiome Project

veqtl-mapper

tool

Variance Association Mapping For Molecular Phenotypes

Genotype-Tissue Expression (GTEx)

pancancer

tool

Gene Expression Machine Learning Classifiers From Tcga Pancanceratlas

Gabriella Miller Kids First

SmCCNet

tool

Unsupervised Discovery Of Phenotypespecific Multiomics Networks

Metabolomics

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