Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (522)

RVTESTS

tool

An Efficient And Comprehensive Tool For Rare Variant Association Analysis Using Sequence Data

Metabolomics

OnTAD

tool

Hierarchical Domain Structure Reveals The Divergence Of Activity Among Tads And Boundaries

4D Nucleome

SMARTS

tool

Reconstructing Disease Response Networks From Multiple Individuals Using Time Series Gene Expression...

Library of Integrated Network-Based Cellular Signatures (LINCS)

Sharpr-MPRA

tool

Genome-Scale High-Resolution Mapping Of Activating And Repressive Nucleotides In Regulatory Regions

Genotype-Tissue Expression (GTEx)

Drug Gene Budger (DGB)

tool

An Application For Ranking Drugs To Modulate A Specific Gene Based On Transcriptomic Signatures

Library of Integrated Network-Based Cellular Signatures (LINCS)

BART-BMA

tool

Additive Regression Trees Using Model Averaging

Library of Integrated Network-Based Cellular Signatures (LINCS)

tammar

tool

Transcriptomic Analysis Supports Similar Functional Roles For The Two Thymuses Of The Tammar Wallaby

Gabriella Miller Kids First

archs4

tool

Massive Mining Of Publicly Available Rna-Seq Data From Human And Mouse

Library of Integrated Network-Based Cellular Signatures (LINCS)

EVpedia

tool

A Community Web Portal For Extracellular Vesicles Research

Extracellular RNA Communication

Genome Modeling System

tool

A Knowledge Management Platform For Genomics

Gabriella Miller Kids First

KBase

tool

A Restful For Accessing Microbial Community Data For Mgrast

Human Microbiome Project