Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

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Associated Digital Objects (522)

HMP16SData

tool

Efficient Access To The Human Microbiome Project Through Bioconductor

Human Microbiome Project

smallmoleculesuite

tool

Cheminformatics Tools For Analyzing And Designing Optimized Smallmolecule Collections And Libraries

Library of Integrated Network-Based Cellular Signatures (LINCS)

SitePainter

tool

A Tool For Exploring Biogeographical Patterns

Human Microbiome Project

PECAN

tool

Library-Free Peptide Detection For Data-Independent Acquisition Tandem Mass Spectrometry Data

Library of Integrated Network-Based Cellular Signatures (LINCS)

eCAVIAR

tool

Identifying Causal Variants At Loci With Multiple Signals Of Association

Genotype-Tissue Expression (GTEx)

MultiCancer

tool

Using Multitask Learning To Predict Signaling And Regulatory Pathways In Cancer

Library of Integrated Network-Based Cellular Signatures (LINCS)

Enrichr

tool

Interactive And Collaborative Html5 Gene List Enrichment Analysis Tool

Library of Integrated Network-Based Cellular Signatures (LINCS)

BioJupies

tool

Automated Generation Of Interactive Notebooks For Rna-Seq Data Analysis In The Cloud

Library of Integrated Network-Based Cellular Signatures (LINCS)

pVAC-Seq

tool

A Genome-Guided In Silico Approach To Identifying Tumor Neoantigens

Gabriella Miller Kids First

DiNAMIC

tool

A Method To Identify Recurrent Dna Copy Number Aberrations In Tumors

Genotype-Tissue Expression (GTEx)

SCAN

tool

Facilitating Integrative Analyses Of Cytosine Modification And Expression Qtl

Genotype-Tissue Expression (GTEx)

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