Common Fund Tools Assessments

rubric

Evaluation of developed tools funded by the NIH Common Fund.

License: Free

Tags: Tools CF NIH

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Associated Metrics (9)

Licensing information is provided on the tools home page

url

A core aspect of data reusability is the ability to determine, unambiguously and with relative ease,...

Common-Fund Tools

The tool has a unique name and an informative description

url

Most people use a search engine to initiate a search for a particular digital resource of interest. ...

Common-Fund Tools

The tool can be freely downloaded or accessed from a webpage

url

The change to an identifier scheme will have widespread implications for resource lookup, linking, a...

Common-Fund Tools

Machine readable metadata

url

Metadata play an important role in enable users to find a resource of interest. Metadata may be inde...

Common-Fund Tools

Tutorials for the tool are available on the toolÂ’s homepage

url

Some digital resources comprise of sensitive data, and require additional measures (such as institut...

Common-Fund Tools

Source code is shared in a public repository and is documented

url

Digital resources and their metadata should be retrievable throguh standardised communication protoc...

Common-Fund Tools

Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided

url

Reusability is not only a technical issue; data can be discovered, retrieved, and even be machine-re...

Common-Fund Tools

The tool can be accessed programmatically through an API and follows community standards for open APIs

url

The availability of machine-readable metadata that describes a digital resource.

Common-Fund Tools

A standardized ID or accession number is used to identify the dataset

url

The tool or the paper describing it contains a unique identifier. It is a necessary condition to una...

Common-Fund Tools

Associated Digital Objects (264)

HMZDelFinder

tool

Homozygous And Hemizygous Cnv Detection From Exome Sequencing Data In A Mendelian Disease Cohort

Gabriella Miller Kids First

HMZDelFinder

tool

Homozygous And Hemizygous Cnv Detection From Exome Sequencing Data In A Mendelian Disease Cohort

Gabriella Miller Kids First

CGAP-align

tool

A High Performance Dna Short Read Alignment Tool

Gabriella Miller Kids First

CONFIT

tool

Finding Associated Variants In Genomewide Association Studies On Multiple Traits

Genotype-Tissue Expression (GTEx)

NeatFreq

tool

Reference-Free Data Reduction And Coverage Normalization For De Novo Sequence Assembly

Human Microbiome Project

3depiloop

tool

Genome-Wide Chromatin Looping Prediction

4D Nucleome

metaFARVAT

tool

An Efficient Tool For Meta-Analysis Of Family-Based, Case-Control, And Population-Based Rare Variant...

Metabolomics

Meta-GxE

tool

Identify Gene-By-Environment Interactions By Combining Studies That Collect The Same Phenotype Under...

Genotype-Tissue Expression (GTEx)

eQTL

tool

Cross-Population Joint Analysis Of Eqtls: Fine Mapping And Functional Annotation

Genotype-Tissue Expression (GTEx)

beRBP

tool

Binding Estimation For Human Rna-Binding Proteins

Extracellular RNA Communication

easystrata

tool

Evaluation And Visualization Of Stratified Genome-Wide Association Meta-Analysis Data

Metabolomics