FAIR metrics by fairmetrics.org

rubric

A set of metrics to assess the FAIRness of digital resources. Based on work published in https://www.nature.com/articles/sdata2018118

License: https://opensource.org/licenses/MIT

Tags: fair metrics universal core metrics all digital objects

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Associated Metrics (16)

Linked

url

A URL to the LinkSet document for the resource.

Digital resource license

url

Provide a URL to the license that governs the use of the digital resource.

Metadata license

url

Provide a URL to the license that governs the use of the digital resource.

Provenance scheme

url

Provide the URL of a vocabulary used to describe the provenance of the digital resource.

Certificate of compliance to community standard

url

A URL to a certified document that the digital resource complies to a community standard.

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Associated Digital Objects (1156)

BDBag of DNase-Seq data from the ENCODE project for 27 tissues(D1)

data

A BDBag of tissue-specific DNase-seq data from ENCODE, for hundreds of biosample replicates and 27 t...

dnase encode raw bdbag

Aligned reads of DNase Sequence data from ENCODE project

data

Aligned reads of DNASE-Seq data of 27 tissues from the ENCODE project with two alignment seeds (16 a...

dnase bam

Non-redundant motifs for TFBS inference

data

Database file containing the hits produced

Database of hits

data

Database generated from the hits produced by non-redundant motifs (http://minid.bd2k.org/minid/landi...

Transcription Factor Binding Sites for DNAse data from 27 tissues in ENCODE

data

BDBag of 54 BDBags containing candidate TFBSs , one BDBag per {tissue, seed}. Each BDBag contains tw...

BED files with footprints of ENCODE DNase Sequence data

data

BDBag of 54 BDBags containing footprints computed one per {tissue, seed}. Each BDBag contains two B...

ENCODE2BDBag Service

tool

A Service to create a BDBag for a given ENCODE query or metadata file. The resulting BDBag includes ...

ENCODE2BdBag Tool

tool

Utility for converting ENCODE search URLs or metadata files into BDBags

Galaxy workflow for generating Footprints

tool

A Galaxy workflow for generating transcription factor binding sites from DNAse data from ENCODE

Docker container description for analysis tools used in creating the atlas of putative transcription factor binding sites from terabytes of ENCODE DNase I hypersensitive sites sequencing data

tool

Dockerfile that enables recreation of Docker container with footprinting tools (HINT, Wellington)

Docker Container for analysis tools used in creating the atlas of putative transcription factor binding sites from terabytes of ENCODE DNase I hypersensitive sites sequencing data

tool

Docker Container for analysis tools used in creating the atlas of putative transcription factor bind...

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