wdl-pcawg-sanger-cgp-workflow

integrate

INTEGRATE workflow: untar, tophat align, samtools index, Integrate fusion

kn_fetcher

Retrieve appropriate subnetwork from KnowEnG Knowledge Network from AWS S3 storage

kn_mapper

Maps gene identifiers in file to standardized entities in the Knowledge Network

cwl-gene-prioritization

network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by ...

awscli

gdc-dnaseq-cwl/GDC_DNASeq

fpfilter

muse

mutect

pindel