variantbam

This is the VariantBam tool used in the PCAWG project. VariantBam was created by Jeremiah Wala (jwal...

pcawg-dkfz-workflow

PCAWG DKFZ variant calling workflow is developed by German Cancer Research Center (DKFZ, https://www...

pcawg_broad_wgs_variant_callers/pcawg-broad-wgs-variant-caller

pcawg-consensus-caller

This is the ConsensusCalling tool used in the PCAWG project. ConsensusCalling was created by Jonatha...

pcawg-gatk-cocleaning

PCAWG GATK Co-cleaning workflow is developed by the Broad Institute (https://www.broadinstitute.org)...

pcawg-minibam

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workf...

pcawg-muse

PCAWG MuSE variant calling workflow is developed by MD Anderson Cancer Center (http://bioinformatics...

pcawg-oxog-filter

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associate...

pcawg-snv-indel-annotation

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workf...

pcawg_delly_workflow

PCAWG EMBL variant calling workflow is developed by European Molecular Biology Laboratory at Heidelb...

wdl-pcawg-bwa-mem-workflow