dockstore-tool-ubu-sam-diff

Diff two SAM/BAM files outputting discrepant reads in corresponding SAM/BAM files

dockstore-tool-ubu-sam-filter

Filter reads from a paired end SAM or BAM file (only outputs paired reads)

dockstore-tool-ubu-sam-summary

Output summary statistics per reference for a SAM/BAM file (Aligned reads only).

topmed-workflows/TopMed_Variant_Caller

topmed-workflows/TopMed_Variant_Caller_wdl_checker

topmed-workflows/CRAM_no_header_md5sum

topmed-workflows/u_of_Michigan_alignment_pipeline

topmed-workflows/u_of_Michigan_alignment_pipeline_wdl_checker

topmed-workflows/CRAM_no_header_md5sum_wdl_checker

topmed-workflows/Functional_Equivalence

topmed-workflows/TOPMed_alignment_pipeline_CWL_cwl_checker

Checker for the TopMed alignment workflow.