Dockstore Automated Testing

A project to hold automated dockstore assessments

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Associated Digital Objects (104)

dockstore_workflow_cnv

Copynumber variation workflow, runs ADTEx and Varscan

dockstore_workflow_fusion

Fusion workflow, runs STARFusion and Arriba

dockstore_workflow_snps

A workflow for running MuSe, MuTect, SomaticSniper, and Pindel. See [the github repository](https://...

protect

rnaseq-cgl-pipeline

ga4gh_challenge

Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs...

EOSC-Pilot

dockstore-tool-bamstats

![build_status](https://quay.io/repository/collaboratory/dockstore-tool-bamstats/status) A Docker co...

postgres/private_demo

Convert a bedGraph file to bigWig format (see also http://www.ncbi.nlm.nih.gov/pubmed/20639541 ) us...

dockstore-tool-bedtools-genomecov

Tool: bedtools genomecov (aka genomeCoverageBed) Sources: https://github.com/arq5x/bedtools2 Summ...

dockstore-tool-bwa-aln

Usage: bwa aln [options] <prefix> <in.fq> Options: -n NUM max #diff (int) or missing prob unde...

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