FAIRshake
Projects
Rubrics
Install Chrome Extension
Install Bookmarklet
Documentation
Login
Sign up
FAIRness of LINCS Datasets and Tools
project
FAIR evaluation of the LINCS NIH Program tools and datasets
Tags:
DCPPC
URL(s):
http://lincsproject.org/
View Associations
View Analytics
Project Assessments (16)
Assessment
Metrics
Target
Rubric
The tool has a unique name and an informative description.
The tool can be freely downloaded or accessed from a webpage.
The tool utilizes a community-accepted ontology.
Tutorials for the tool are available on the tools homepage.
Source code is shared in a public repository and is documented.
Previous versions of the tool are made available.
Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.
The tool can be accessed programmatically through an API and follows community standards for open APIs.
Licensing information is provided on the tools homepage.
A standardized ID or accession number is used to identify the dataset.
The dataset is described with metadata using a formal, broadly applicable vocabulary.
Information is provided on the experimental methods used to generate the data.
The dataset is hosted in an established data repository, if a relevant repository exists.
The dataset can be downloaded for free from the repository.
Version information is provided for the dataset.
Contact information is provided for the creator(s) of the dataset.
Information is provided describing how to cite the dataset.
Licensing information is provided on the datasets landing page.
The structure of the repository permits efficient discovery of data and metadata by end users.
The repository uses a standardized protocol to permit access by users.
The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts.
Tools that can be used to analyze each dataset are listed on the corresponding dataset pages.
The repository maintains licenses to manage data access and use.
The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository.
The repository provides documentation for each resource to permit its complete and accurate citation.
A description of the methods used to acquire the data is provided.
Version information is provided for each resource, where available.
ANISEED database
The metadata includes a title for the data resource
The metadata includes a description of what the data is about
no cost to access the data resource
LDG-1042: LDS-1045
The FAIRshake dataset rubric
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
yes (1.00)
LDG-1107: LDS-1110
The FAIRshake dataset rubric
yesbut (0.75)
yes (1.00)
no (0.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
yes (1.00)
LINCS Data Portal
The FAIRshake tool rubric
no (0.00)
yes (1.00)
nobut (0.25)
nobut (0.25)
nobut (0.25)
no (0.00)
yes (1.00)
yes (1.00)
yesbut (0.75)
Immune Epitope Database and Analysis Resource (IEDB)
The FAIRshake repository rubric
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
Mouse Genome Informatics: Gene Expression Literature Query
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
yes (1.00)
yesbut (0.75)
yesbut (0.75)
Mouse Genome Informatics: Mouse Developmental Anatomy Browser
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
no (0.00)
no (0.00)
yes (1.00)
yesbut (0.75)
yesbut (0.75)
LINCS Test Object
FAIRshake JSON-LD Rubric
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
LDG-1071: LDS-1074
The FAIRshake dataset rubric
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
no (0.00)
Drug Response Browser
The FAIRshake tool rubric
yes (1.00)
yesbut (0.75)
no (0.00)
nobut (0.25)
no (0.00)
no (0.00)
yes (1.00)
nobut (0.25)
nobut (0.25)
iLINCS
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
nobut (0.25)
yes (1.00)
no (0.00)
yes (1.00)
yes (1.00)
yes (1.00)
no (0.00)
L1000CDS2
The FAIRshake tool rubric
Drug-Pathway Browser
The FAIRshake tool rubric
Query App
The FAIRshake tool rubric
Breast Cancer Browser
The FAIRshake tool rubric
LINCS Data Portal
The FAIRshake tool rubric
LINCS Data Portal
The FAIRshake tool rubric
yes (1.00)
yes (1.00)
yesbut (0.75)
no (0.00)
no (0.00)
no (0.00)
nobut (0.25)
yesbut (0.75)
yes (1.00)