4DN data portal

project

The 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.

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Associated Digital Objects (59)

sciRNA-seq on F123 cells

data

sciRNA-seq on F123 cells

Experiment

GAM on mouse brain cell types

data

GAM on mouse brain cell types

Experiment

FOF-CT - DNA-spot/trace Core File for Chromatin tracing of chrX in IMR90

FOF-CT - DNA-spot/trace Core File for Chromatin tracing of chrX in IMR90

Datafile

Contact Matrix dataset file

any

Contact Matrix of Hi-C on extra embryonic stem cells (XEN) from mouse in .hic format

processed file

RNA-seq on KH2 ESC

data

RNA-seq on epiblast stem cells (EPISC) from mouse - Biological replicate 1, technical replicate 1

experiment

4DN data repository

repo

The 4D Nucleome Network aims to understand the principles behind the three-dimensional organization ...

repository

Biosource KH2 ESC

data

KH2 Embryonic stem cells

Biosource

Biosample for ATAC-seq in epiblast stem cells (EPISC) from mouse

data

ATAC-seq in epiblast stem cells (EPISC) from mouse, Biological replicate 1

biosample

ATAC-seq on KH2 ESC

data

ATAC-seq in epiblast stem cells (EPISC) from mouse, Biological replicate 1, Technical replicate 1

experiment

RNA FISH in mouse embryonic stem cells ES-E14TG2a

data

RNA FISH for nascent transcription of genes combined with ORCA labeling for 44 SEs, Biological repli...

data

multiplexed FISH on IMR-90

data

DNA-MERFISH to image 1041 genomic loci covering 22 automosome and X chromosome in IMR90 cells treate...

experiment

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