
4DN data portal
projectThe 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.
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sciRNA-seq on F123 cells
datasciRNA-seq on F123 cells
GAM on mouse brain cell types
dataGAM on mouse brain cell types
FOF-CT - DNA-spot/trace Core File for Chromatin tracing of chrX in IMR90
FOF-CT - DNA-spot/trace Core File for Chromatin tracing of chrX in IMR90
Contact Matrix dataset file
anyContact Matrix of Hi-C on extra embryonic stem cells (XEN) from mouse in .hic format
RNA-seq on KH2 ESC
dataRNA-seq on epiblast stem cells (EPISC) from mouse - Biological replicate 1, technical replicate 1
4DN data repository
repoThe 4D Nucleome Network aims to understand the principles behind the three-dimensional organization ...
Biosource KH2 ESC
dataKH2 Embryonic stem cells
Biosample for ATAC-seq in epiblast stem cells (EPISC) from mouse
dataATAC-seq in epiblast stem cells (EPISC) from mouse, Biological replicate 1
ATAC-seq on KH2 ESC
dataATAC-seq in epiblast stem cells (EPISC) from mouse, Biological replicate 1, Technical replicate 1
RNA FISH in mouse embryonic stem cells ES-E14TG2a
dataRNA FISH for nascent transcription of genes combined with ORCA labeling for 44 SEs, Biological repli...
multiplexed FISH on IMR-90
dataDNA-MERFISH to image 1041 genomic loci covering 22 automosome and X chromosome in IMR90 cells treate...