4DN data portal

project

The 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.

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Associated Digital Objects (59)

Dual color smFISH on fruit fly embryo (nuclear cycle 13)

data

Dual color smFISH on fruit fly embryo (nuclear cycle 13)

Experiment

single cell Hi-C on sorted haploid H129-1s

data

single cell Hi-C on sorted haploid H129-1s

Experiment

Live imaging of chromatin topology and transcription

data

Live imaging of chromatin topology and transcription

Experiment

RNA-seq of early embryos in vitro

data

RNA-seq of early embryos in vitro

Experiment

TSA-seq SON in K562 - HS

data

TSA-seq SON in K562 - HS

Experiment

NAD-seq on MEF cells (not crosslinked)

data

NAD-seq on MEF cells (not crosslinked)

Experiment

TCC on IMR90 +/- Adenovirus

data

TCC on IMR90 +/- Adenovirus

Experiment

Hi-C and Micro-C on WTC-11 derived iPS cells

data

Hi-C and Micro-C on WTC-11 derived iPS cells

Experiment

sciHi-C on F121-6 cells

data

sciHi-C on F121-6 cells

Experiment

RNA-DNA SPRITE on pSM33 mESCs

data

RNA-DNA SPRITE on pSM33 mESCs

Experiment

DNA FISH on Chr4

data

DNA FISH on Chr4

Experiment

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