
4DN data portal
projectThe 4D Nucleome Network aims to understand the principles behind the three-dimensional organization of the nucleus in space and time (the 4th dimension) and the role nuclear organization plays in gene expression and cellular function. The Network utilizes existing omics and imaging technologies as well as develop new ones to generate data and create resources to enable the study of the 4D Nucleome.
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View Analytics View AssessmentsAssociated Digital Objects (59)
4DN Jupyter Hub Tool - BETA
Jupyter notebook for dpwnloading/viewing 4DN Data
4DN Visualization Workspace
toolToll allowing users to create 1D or 2D genome display
MicroMeta - Beta tool
toolInterface to collect metadata about microscopes
single cell RNA-seq on hamster olfactory sensory neurons
datasingle cell RNA-seq on hamster olfactory sensory neurons
E/L repliseq on U2OS cells (2017-08-17)
dataE/L repliseq on U2OS cells (2017-08-17)
sciATAC-seq on F123 cells
datasciATAC-seq on F123 cells
5C on 6Mb of chrX
data5C on 6Mb of chrX
data
sn-Hi-C on animal zygote with Rad21 deletion with DpnII
DpnII-seq on K562 cells
dataDpnII-seq on K562 cells
Bru-seq on F121-9 mESCs
dataBru-seq on F121-9 mESCs
H3K4me2 - K562
dataH3K4me2 - K562