FAIRshake

FAIRness of GTEx Tools and Datasets

project

FAIR evaluation of the GTEx tools and datasets

Tags: DCPPC

URL(s):

https://gtexportal.org/home/

View Associations View Analytics

Project Assessments (15)

Assessment			Metrics
Target	Rubric		The tool has a unique name and an informative description.	The tool can be freely downloaded or accessed from a webpage.	The tool utilizes a community-accepted ontology.	Tutorials for the tool are available on the tools homepage.	Source code is shared in a public repository and is documented.	Previous versions of the tool are made available.	Contact information is provided for the creator(s) of the tool and information describing how to cite the tool is provided.	The tool can be accessed programmatically through an API and follows community standards for open APIs.	Licensing information is provided on the tools homepage.	A standardized ID or accession number is used to identify the dataset.	The dataset is described with metadata using a formal, broadly applicable vocabulary.	Information is provided on the experimental methods used to generate the data.	The dataset is hosted in an established data repository, if a relevant repository exists.	The dataset can be downloaded for free from the repository.	Version information is provided for the dataset.	Contact information is provided for the creator(s) of the dataset.	Information is provided describing how to cite the dataset.	Licensing information is provided on the datasets landing page.	The structure of the repository permits efficient discovery of data and metadata by end users.	The repository uses a standardized protocol to permit access by users.	The repository provides contact information for staff to enable users with questions or suggestions to interact with repository experts.	Tools that can be used to analyze each dataset are listed on the corresponding dataset pages.	The repository maintains licenses to manage data access and use.	The repository hosts data and metadata according to a set of defined criteria to ensure that the resources provided are consistent with the intent of the repository.	The repository provides documentation for each resource to permit its complete and accurate citation.	A description of the methods used to acquire the data is provided.	Version information is provided for each resource, where available.	Data is expressed in compliance with a machine-understandable community standard (Important)	ANISEED database	provides clear steps to reproduce the data	Globally unique identifier
GTEx Portal Datasets	The FAIRshake dataset rubric											no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)
GTEx Test Your Own	The FAIRshake tool rubric		no (0.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	no (0.00)
GTEx Single-Tissue eQTLs	The FAIRshake tool rubric		no (0.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	no (0.00)
Gene eQTL Visualizer	The FAIRshake tool rubric		no (0.00)	yes (1.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	no (0.00)
IGV eQTL Browser	The FAIRshake tool rubric		yesbut (0.75)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	no (0.00)
eQTL Dashboard	The FAIRshake tool rubric		no (0.00)	yes (1.00)	yes (1.00)	no (0.00)	no (0.00)	no (0.00)	yes (1.00)	no (0.00)	no (0.00)
Gene eQTL Visualizer	The FAIRshake tool rubric		yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)
GTEx Portal Datasets	The FAIRshake dataset rubric
Genotype-Tissue Expression	The FAIRshake repository rubric
Genotype-Tissue Expression	FairmetricsPlus: Veracity																													yes (1.00)		yes (1.00)	yes (1.00)
Genotype-Tissue Expression	The FAIRshake repository rubric
GTEx Portal Datasets	The FAIRshake dataset rubric											yes (1.00)	yesbut (0.75)	yes (1.00)	yes (1.00)	yesbut (0.75)	yes (1.00)	yesbut (0.75)	yes (1.00)	no (0.00)
Genotype-Tissue Expression	The FAIRshake repository rubric																				yes (1.00)	yesbut (0.75)	yes (1.00)	nobut (0.25)	nobut (0.25)	yes (1.00)	yes (1.00)	yes (1.00)	yes (1.00)
GTEx Portal Datasets	The FAIRshake dataset rubric
GTEx Tissue Dashboard	The FAIRshake tool rubric		no (0.00)	yes (1.00)	no (0.00)	nobut (0.25)	no (0.00)	no (0.00)	yesbut (0.75)	yesbut (0.75)	no (0.00)