dockstore-tool-samtools-index
Prints alignments in the specified input alignment file. Usage: samtools index [-bc] [-m INT] <in.bam> aln.bam|aln.cram Options: -b Generate BAI-format index for BAM files [default] -c Generate CSI-format index for BAM files -m INT Set minimum interval size for CSI indices to 2^INT [14] For a CRAM file aln.cram, index file aln.cram.crai will be created. For a BAM file aln.bam, either aln.bam.bai or aln.bam.csi will be created, depending on the index format selected.
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View AssociationsDigital Object Assessments (1)
| Assessment | Metrics | Date | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rubric | Project | Globally unique identifier | Persistent identifier | Machine-readable metadata | Standardized metadata | Resource identifier in metadata | Resource discovery through web search | Open, Free, Standardized Access protocol | Persistence of resource and metadata | Resource uses formal language | FAIR vocabulary | Linked | Digital resource license | Metadata license | Provenance scheme | Certificate of compliance to community standard | ||
| FAIR metrics by fairmetrics.org | Dockstore Automated Testing |
|
yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | yes (1.00) | maybe (0.50) | no (0.00) | no (0.00) | yes (1.00) | no (0.00) | no (0.00) | no (0.00) | no (0.00) | Jan 24, 2019 |
